Browse Element(s) Details


Os.46600.1.S1_at

Description gb:AK058809.1
DB_XREF= gi:32968827
TID=Os.46600.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative helix-loop-helix DNA-binding protein (OSJNBa0095C06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C09, full insert sequence.
FL= gb:AK058809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2305011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46600.1.S1_at--891--651Chr10:11685446..11685470 (25 bp)
ATGCACACAGCAGGATCGTCGTCAA
LOC_Os10g23050
Os.46600.1.S1_at--802--991Chr10:11685457..11685481 (25 bp)
AGGATCGTCGTCAAGCCTGCAGAGA
LOC_Os10g23050
Os.46600.1.S1_at--232--7091Chr10:11685466..11685490 (25 bp)
GTCAAGCCTGCAGAGACGACGACTA
LOC_Os10g23050
Os.46600.1.S1_at--19--10091Chr10:11685626..11685650 (25 bp)
TAGGGCTCACCACCTTGCATCTCAA
LOC_Os10g23050
Os.46600.1.S1_at--161--3271Chr10:11686004..11686028 (25 bp)
CAACTGCAGTGCATGAGATTCTGGA
LOC_Os10g23050
Os.46600.1.S1_at--389--10271Chr10:11686051..11686075 (25 bp)
TTTGCTGATGCCAAAACTAGCTTGT
LOC_Os10g23050
Os.46600.1.S1_at--840--3611Chr10:11686071..11686095 (25 bp)
CTTGTGAATTGTACTGCCTGCAGCT
LOC_Os10g23050
Os.46600.1.S1_at--42--9051Chr10:11686089..11686113 (25 bp)
TGCAGCTGCCTACTTTCCCAGATGT
LOC_Os10g23050
Os.46600.1.S1_at--277--9891Chr10:11686099..11686123 (25 bp)
TACTTTCCCAGATGTGCTCCAGCTG
LOC_Os10g23050
Os.46600.1.S1_at--737--7671Chr10:11686124..11686148 (25 bp)
GGGATTCTCTTGTATGTAATGGCAC
LOC_Os10g23050
Os.46600.1.S1_at--137--5031Chr10:11686152..11686176 (25 bp)
GCAGTGCAGGCATCAAATGTTTATT
LOC_Os10g23050
Target Sequence 
ATGCACACAGCAGGATCGTCGTCAAGCCTGCAGAGACGACGACTACGGCCGCCGGTGGCGGCGCCGGCGCGGCGATCGCC
GACATCGAGGCGAGCATGGTGGAGNGCCACGCCAGCGTCAAGGTGCAGGCGCGGCGGCGGCCGAGGCAGCTGCTCAAGCT
CGTCGCCGGGCTCCACCAGCTAGGGCTCACCACCTTGCATCTCAACGTCACCACCGTCGCCGCCATGGCCATGTACTCCT
TCAGCCTCAAGGTGGAGGATGGATGTAAGCTTGGGTCTGTGGAGGAGATTGCAACTGCAGTGCATGAGATTCTGGAGAGG
ATGCAGGAGGAGCAGGCTTTTGCTGATGCCAAAACTAGCTTGTGAATTGTACTGCCTGCAGCTGCCTACTTTCCCAGATG
TGCTCCAGCTGGGGATTCTCTTGTATGTAATGGCACTTGGCAGTGCAGGCATCAAATGTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis