Browse Element(s) Details


OsAffx.20428.1.S1_at

Description tigr:9638.m01961
TID=OsAffx.20428.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20428.1.S1_at--103--10151Chr10:11698673..11698697 (25 bp)
TATCGAGGTTGCTCTTCTGAATCTC
LOC_Os10g23080
OsAffx.20428.1.S1_at--318--5251Chr10:11698691..11698979 (25 bp)
GAATCTCAAGGATGTCACTTCAGCG
LOC_Os10g23080
OsAffx.20428.1.S1_at--883--8731Chr10:11698967..11698991 (25 bp)
TGTCACTTCAGCGAAACCGTTCATC
LOC_Os10g23080
OsAffx.20428.1.S1_at--379--2371Chr10:11698980..11699004 (25 bp)
AAACCGTTCATCCAAACTGCCATAG
LOC_Os10g23080
OsAffx.20428.1.S1_at--836--2551Chr10:11698994..11699018 (25 bp)
AACTGCCATAGAACCTAACTTGAAT
LOC_Os10g23080
OsAffx.20428.1.S1_at--1159--8011Chr10:11699033..11699057 (25 bp)
GGAGGGTGCAGATTTCTATTATTGC
LOC_Os10g23080
OsAffx.20428.1.S1_at--1094--3673Chr10:11699048..11699072 (25 bp)
CTATTATTGCGGTTTAGGGATGTCA
LOC_Os10g23080
OsAffx.20428.1.S1_at--237--1071Chr10:11699063..11699087 (25 bp)
AGGGATGTCATTTAAACTCTATGTA
LOC_Os10g23080
OsAffx.20428.1.S1_at--586--351Chr10:11699398..11699419 (22 bp)
ATAACGCGGGCGACGCAACTGTGGT
LOC_Os10g23080
OsAffx.20428.1.S1_at--499--4611Chr10:11699404..11699428 (25 bp)
GCGACGCAACTGTGGTGACAGCGAC
LOC_Os10g23080
OsAffx.20428.1.S1_at--898--4351Chr10:11699668..11699692 (25 bp)
CCAGCCGACAGAGCAGACGGGCAGT
LOC_Os10g23080
Target Sequence 
TATCGAGGTTGCTCTTCTGAATCTCAAGGATGTCACTTCAGCGAAACCGTTCATCCAAACTGCCATAGAACCTAACTTGA
ATGGTTTTATGAAGATGGAGGGTGCAGATTTCTATTATTGCGGTTTAGGGATGTCATTTAAACTCTATGTAAAGATGAGG
GATAACGCGGGCGACGCAACTGTGGTGACAGCGACGACAGGCAACGCGGCGGCGGTGGGGGGAGGAGCTGCGGGCGGGCA
GCGGGGGAGGGGCGACGGGGGGAGGAGCGGCGTGCGGACTCCCCCGCTGGCCGCCACCCAAAAGGCCCACGAGGCGGCGG
CGGGGGGAGGAGCTGCGGGCAGGCGGCGGCGCGCGGCCGGCGGCGGGCGGAGCGGCGGCAGATGCACCTGCTGCACAGGC
CTGCCGGAGGACCGGGCGACAGCGCGGGGAGCGGCCAGCCGACAGAGCAGACGGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis