Browse Element(s) Details


OsAffx.16381.2.S1_x_at

Description tigr:9635.m02242
TID=OsAffx.16381.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2354011/11expressed protein
LOC_Os12g326904/11hypothetical protein
LOC_Os10g231103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23494Os.43624.1.S1_at6/117+13274520..13281970hypothetical protein
LOC_Os07g23494OsAffx.2182.1.S1_at1/117+13274520..13281970hypothetical protein
LOC_Os07g23510OsAffx.28553.1.S1_x_at11/117+13282995..13283402expressed protein
LOC_Os07g23520Os.9398.2.S1_at11/117+13286278..13291643expressed protein
LOC_Os07g23520Os.9398.1.S1_a_at10/117+13286278..13291643expressed protein
LOC_Os07g23530OsAffx.16381.4.S1_at11/117+13292110..13292430hypothetical protein
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein
LOC_Os07g23550Os.7469.1.S1_at11/117+13311880..13314898expressed protein
LOC_Os07g23560OsAffx.28555.1.S1_at11/117+13320480..13321350hypothetical protein
LOC_Os07g23570Os.9017.1.S1_x_at11/117+13322237..13324546Cytochrome P450 family protein, expressed
LOC_Os07g23580NANA7+13328336..13329246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16381.2.S1_x_at--1042--5471Chr07:13303459..13303483 (25 bp)
GAACTTCGACAGTACCATCAGTCCA
LOC_Os07g23540
OsAffx.16381.2.S1_x_at--803--4312Chr10:11733260..11733284 (25 bp)
CCATCAGTCCACTACGTCAAAGGGT
LOC_Os10g23110
OsAffx.16381.2.S1_x_at--334--5313Chr10:11733298..11733322 (25 bp)
GAAGGAGTGCCACCTGAACAATGGA
LOC_Os10g23110
OsAffx.16381.2.S1_x_at--426--1351Chr07:13303552..13303576 (25 bp)
AGAGTTGCTAGACAACTGCTGCAAA
LOC_Os07g23540
OsAffx.16381.2.S1_x_at--953--8993Chr10:11733378..11733402 (25 bp)
TGAAGAGCACCATATCCAGGATCTT
LOC_Os10g23110
OsAffx.16381.2.S1_x_at--842--1071Chr07:13303699..13303723 (25 bp)
AGGGCAACAATCTACTGATCTGAAT
LOC_Os07g23540
OsAffx.16381.2.S1_x_at--1097--7651Chr07:13303737..13303761 (25 bp)
GGGATCTATCTATCGTACTAATTCA
LOC_Os07g23540
OsAffx.16381.2.S1_x_at--235--1132Chr10:11733628..11733652 (25 bp)
AGTGCATCATCTCCCAATTATCAAA
NONE
OsAffx.16381.2.S1_x_at--969--2413Chr10:11733650..11733674 (25 bp)
AAAAGATTCCAGTGGCTGCCCGGCA
NONE
OsAffx.16381.2.S1_x_at--739--7973Chr10:11733675..11733699 (25 bp)
GGATCGACTCTGATTATGGCCCAAT
NONE
OsAffx.16381.2.S1_x_at--873--931Chr07:13303921..13303945 (25 bp)
AGGCACACCGTTAGTGCCACGGCAA
LOC_Os07g23540
Target Sequence 
GAACTTCGACAGTACCATCAGTCCACTACGTCAAAGGGTGATACTAGCATTAGAAGGAGTGCCACCTGAACAATGGAACA
AAGAGGCTATAACAGAGTTGCTAGACAACTGCTGCAAAATCGAAGAACTGTATGAAGAGCACCATATCCAGGATCTTTCG
GTGTTTAGATTGGCGGCATGGACATCAAACTGTGATCTTATCCCCAAAATCATAGAGTGGAACATTGGCACAAATCAGCC
AGGGCAACAATCTACTGATCTGAATTGGAAACCAAATGGGGATCTATCTATCGTACTAATTCACATCGAAAAGCTGTTTG
ACTACAGTGATCCAACCAATGGAAACGAAGACAATCCAGAGGCTCTCATAGAGTATGAAAACAAAGTGCATCATCTCCCA
ATTATCAAAAGATTCCAGTGGCTGCCCGGCAGGATCGACTCTGATTATGGCCCAATCGAAGGAGGCACACCGTTAGTGCC
ACGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16381.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis