Browse Element(s) Details


Os.9398.1.S1_a_at

Description gb:AK065942.1
DB_XREF= gi:32975960
TID=Os.9398.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047M02, full insert sequence.
FL= gb:AK065942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2352010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23494Os.43624.1.S1_at6/117+13274520..13281970hypothetical protein
LOC_Os07g23494OsAffx.2182.1.S1_at1/117+13274520..13281970hypothetical protein
LOC_Os07g23510OsAffx.28553.1.S1_x_at11/117+13282995..13283402expressed protein
LOC_Os07g23520Os.9398.2.S1_at11/117+13286278..13291643expressed protein
LOC_Os07g23520Os.9398.1.S1_a_at10/117+13286278..13291643expressed protein
LOC_Os07g23530OsAffx.16381.4.S1_at11/117+13292110..13292430hypothetical protein
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein
LOC_Os07g23550Os.7469.1.S1_at11/117+13311880..13314898expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9398.1.S1_a_at--656--8831Chr07:13289345..13289369 (25 bp)
TGATCTCTTTGGCAGCATAAGGGAT
LOC_Os07g23520
Os.9398.1.S1_a_at--706--1951Chr07:13289319..13289343 (25 bp)
ACTGGATTGAAAATGACTTGTCTGG
LOC_Os07g23520
Os.9398.1.S1_a_at--543--2071Chr07:13289304..13289328 (25 bp)
ACTTGTCTGGTTGGATAGGTGCTAA
LOC_Os07g23520
Os.9398.1.S1_a_at--161--1051NONE
AGGTGCTAACAGATTTTATCCTGGA
NONE
Os.9398.1.S1_a_at--231--10351Chr07:13288575..13288599 (25 bp)
TTTATCCTGGAACAGCCGATGCATT
LOC_Os07g23520
Os.9398.1.S1_a_at--458--3351Chr07:13288563..13288587 (25 bp)
CAGCCGATGCATTAAAATTTTCAAG
LOC_Os07g23520
Os.9398.1.S1_a_at--984--6731Chr07:13288539..13288563 (25 bp)
GTTCAGAAGTCTACATAGTCACTAC
LOC_Os07g23520
Os.9398.1.S1_a_at--277--10051Chr07:13288235..13288548 (25 bp)
TAGTCACTACAAAACAGGGCCGATT
LOC_Os07g23520
Os.9398.1.S1_a_at--741--2392Chr01:8430270..8430301 (24 bp)
AAACAGGGCCGATTTGCTGAAGCAC
NONE
Os.9398.1.S1_a_at--1089--8191Chr07:13288182..13288206 (25 bp)
GGAATAGAATTTCCCTCTGAAAGGA
LOC_Os07g23520
Os.9398.1.S1_a_at--493--2551Chr07:13288040..13288064 (25 bp)
AACTGCAGCAAATGCCACAGCATCA
LOC_Os07g23520
Target Sequence 
TGATCTCTTTGGCAGCATAAGGGATGACTGGATTGAAAATGACTTGTCTGGTTGGATAGGTGCTAACAGATTTTATCCTG
GAACAGCCGATGCATTAAAATTTTCAAGTTCAGAAGTCTACATAGTCACTACAAAACAGGGCCGATTTGCTGAAGCACTA
TTAAAAGAATTAGCGGGAATAGAATTTCCCTCTGAAAGGATATATGGGCTTGGCACTGGTCCAAAGGTAAAAGTTCTCCN
AGNCAACTGCAGCAAATGCCACAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9398.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis