Browse Element(s) Details


OsAffx.28553.1.S1_x_at

Description tigr:9635.m02238
TID=OsAffx.28553.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2351011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23494Os.43624.1.S1_at6/117+13274520..13281970hypothetical protein
LOC_Os07g23494OsAffx.2182.1.S1_at1/117+13274520..13281970hypothetical protein
LOC_Os07g23510OsAffx.28553.1.S1_x_at11/117+13282995..13283402expressed protein
LOC_Os07g23520Os.9398.2.S1_at11/117+13286278..13291643expressed protein
LOC_Os07g23520Os.9398.1.S1_a_at10/117+13286278..13291643expressed protein
LOC_Os07g23530OsAffx.16381.4.S1_at11/117+13292110..13292430hypothetical protein
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28553.1.S1_x_at--871--8611Chr07:13283272..13283296 (25 bp)
TGGTGACACCGCATCTCCTCGTCAC
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--317--10691Chr07:13283182..13283206 (25 bp)
TTGCCTTCACCGTCACATCTGAGTC
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--263--10531Chr07:13283177..13283201 (25 bp)
TTCACCGTCACATCTGAGTCACATC
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--868--7091Chr07:13283171..13283195 (25 bp)
GTCACATCTGAGTCACATCCATCCA
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--721--2091Chr07:13283168..13283192 (25 bp)
ACATCTGAGTCACATCCATCCAACG
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--713--4391Chr07:13283144..13283168 (25 bp)
GCCACCGTCGCCTGCATTGGATCTC
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--434--31Chr07:13283129..13283153 (25 bp)
ATTGGATCTCCCTCCTCGCAAGCTT
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--1119--9531Chr07:13283099..13283123 (25 bp)
TCTACCGCCACATCGAGGTTGATGC
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--406--511Chr07:13283088..13283112 (25 bp)
ATCGAGGTTGATGCGGAAGGCCACT
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--145--1011Chr07:13283084..13283108 (25 bp)
AGGTTGATGCGGAAGGCCACTAGCA
LOC_Os07g23510
OsAffx.28553.1.S1_x_at--623--551Chr07:13283078..13283102 (25 bp)
ATGCGGAAGGCCACTAGCAGGGAGA
LOC_Os07g23510
Target Sequence 
TGGTGACACCGCATCTCCTCGTCACCTCCGCCACCGACAATGACGCCACATCTCCCTATCGCCTTCGCGTTCTCCAACAT
CTCCCCCTCCTTGCCTTCACCGTCACATCTGAGTCACATCCATCCAACGCCACCGTCGCCTGCATTGGATCTCCCTCCTC
GCAAGCTTCTGCCTCTACCGCCACATCGAGGTTGATGCGGAAGGCCACTAGCAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28553.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis