Browse Element(s) Details


OsAffx.16381.3.S1_x_at

Description tigr:9640.m03180
TID=OsAffx.16381.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3269011/11hypothetical protein
LOC_Os07g235404/11expressed protein
LOC_Os10g231103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_x_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16381.3.S1_x_at--514--6971Chr12:19706679..19706703 (25 bp)
GTACCATCAGTCCACTGCGTCAAAG
LOC_Os12g32690
OsAffx.16381.3.S1_x_at--479--2033Chr10:11733288..11733315 (25 bp)
ACTAGCATTAGGAGTGCCACCTGAA
LOC_Os10g23110
OsAffx.16381.3.S1_x_at--427--1351Chr12:19706600..19706624 (25 bp)
AGAGTTGCTCGACAACTGTTGCAGA
LOC_Os12g32690
OsAffx.16381.3.S1_x_at--952--8993Chr10:11733378..11733402 (25 bp)
TGAAGAGCACCATATCCAGGATCTT
LOC_Os10g23110
OsAffx.16381.3.S1_x_at--53--31Chr12:19706525..19706549 (25 bp)
ATTGGCGGCATGGACAACAAACTGT
LOC_Os12g32690
OsAffx.16381.3.S1_x_at--843--1072Chr10:11733486..11733510 (25 bp)
AGGGCAACAATCCACTGATCTGAAT
LOC_Os10g23110
OsAffx.16381.3.S1_x_at--591--2411Chr12:19706316..19706340 (25 bp)
AAAACAAAGTGCATCGTCTCCCAAT
LOC_Os12g32690
OsAffx.16381.3.S1_x_at--970--2413Chr10:11733650..11733674 (25 bp)
AAAAGATTCCAGTGGCTGCCCGGCA
NONE
OsAffx.16381.3.S1_x_at--740--7973Chr10:11733675..11733699 (25 bp)
GGATCGACTCTGATTATGGCCCAAT
NONE
OsAffx.16381.3.S1_x_at--70--891Chr12:19706231..19706255 (25 bp)
AGGCGCACCGTCAGTGCTACGGCAA
LOC_Os12g32690
OsAffx.16381.3.S1_x_at--1149--3392Chr10:11733731..11734070 (25 bp)
CAGCTTCCAGTCCACCTTCATGAAG
NONE
Target Sequence 
GTACCATCAGTCCACTGCGTCAAAGGGTGATACTAGCATTAGGAGTGCCACCTGAACAATGGAACAAAGAGGCTATAATA
GAGTTGCTCGACAACTGTTGCAGAATCGAAGAACTGTATGAAGAGCACCATATCCAGGATCTTTCAATGTTTAGATTGGC
GGCATGGACAACAAACTGTGATCTTATCCCAAAGATCATAGAGTGGAACATTGACACAAACCAGTCAGGGCAACAATCCA
CTGATCTGAATTGGAAACCAAATGGGGATCTATCTATCATACTAATTCATATCGAAAAGCTGTTTGACTACAATGATCCA
ACCAGTGGAAATGAAGCCAATCCAGAGGCTCTCATAGAGTATGAAAACAAAGTGCATCGTCTCCCAATTATCAAAAGATT
CCAGTGGCTGCCCGGCAGGATCGACTCTGATTATGGCCCAATCGAAGGAGGCGCACCGTCAGTGCTACGGCAACAGCTTC
CAGTCCACCTTCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16381.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis