Browse Element(s) Details


OsAffx.7771.1.S1_x_at

Description tigr:9640.m03182
TID=OsAffx.7771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3271011/11NB-ARC domain containing protein, expressed
LOC_Os12g327908/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_x_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32730Os.46053.2.S1_x_at9/1112+19741136..19744310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32740NANA12+19745551..19748883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32750OsAffx.31989.1.S1_at11/1112+19750975..19758056expressed protein
LOC_Os12g32750Os.18223.1.S1_s_at11/1112+19750975..19758056expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7771.1.S1_x_at--351--8871Chr12:19726303..19726327 (25 bp)
TGATGACCATCTTTTGCTTCTTCAG
LOC_Os12g32710
OsAffx.7771.1.S1_x_at--391--6412Chr12:19779631..19779655 (25 bp)
GATCTGAAATGCTTGAGTTGCCTCA
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--51--6452Chr12:19779721..19779745 (25 bp)
GATCACTGCCTTCAACTATGGACAC
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--472--10111Chr12:19726126..19726150 (25 bp)
TATGGACACTTTGCACTCCCTGAGG
LOC_Os12g32710
OsAffx.7771.1.S1_x_at--303--1152Chr12:19779762..19779786 (25 bp)
AGTCTGGTTCTGTGTAATGCTCCCC
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--808--3192Chr12:19779815..19779839 (25 bp)
CAATCTGTGGGCTCTTCAAATAAGT
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--254--2772Chr12:19780061..19780085 (25 bp)
AAGAGAATATTCCATCTCACCCCTA
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--723--1311Chr12:19725772..19725796 (25 bp)
AGATGGTTCCTAACTCTAGTGGCCT
LOC_Os12g32710
OsAffx.7771.1.S1_x_at--1128--632Chr12:19780190..19780213 (24 bp)
ATGAGGGCGTTCTCGAATTTCAGAA
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--32--5492Chr12:19780211..19780235 (25 bp)
GAACTTTTGATGCATGCTGTGCGCC
LOC_Os12g32790
OsAffx.7771.1.S1_x_at--422--4733Chr12:19780226..19780250 (25 bp)
GCTGTGCGCCCTATCAAAGATTTGA
LOC_Os12g32790
Target Sequence 
TGATGACCATCTTTTGCTTCTTCAGAATCCATTTAGAAACTTCTGCCTCACTAGAAGACTTGTATCTAATGGATCTGAAA
TGCTTGAGTTGCCTCAGGAATGGTTATTGCAGAATAGTTCTCAGTTGGAGCATATAGAAATAAACAATGCAAATCTGCTC
AGATCACTGCCTTCAACTATGGACACTTTGCACTCCCTGAGGAGTCTGGTTCTGTGTAATGCTCCCCTCCTCGAGACACT
TCCTGCTATGCCCCCCAATCTGTGGGCTCTTCAAATAAGTGGTTGTTGCACTCGTTTAAAGGTGGGGTGTAAAACCAATG
GTTCTGAATGGGAGAAGATTTTGCCAATCCATAAAGTTGATATAAACTAACATGTTATTAGGCAAGAGAATATTCCATCT
CACCCCTAGAAGAGAAGATGGTTCCTAACTCTAGTGGCCTTATTTGGCAGGCTGGGGTTAGGGAAAAATCCTAGCCATGA
AGAGGAAAACAATCCACGAATGAGGGCGTTCTCGAATTTCAGAACTTTTGATGCATGCTGTGCGCCCTATCAAAGATTTG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7771.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis