Browse Element(s) Details


Os.18223.1.S1_s_at

Description gb:C98496
DB_XREF= gi:3761248
DB_XREF=C98496
CLONE=E0338_6Z
TID=Os.18223.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18223 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196693.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32730Os.46053.2.S1_x_at9/1112+19741136..19744310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32740NANA12+19745551..19748883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32750OsAffx.31989.1.S1_at11/1112+19750975..19758056expressed protein
LOC_Os12g32750Os.18223.1.S1_s_at11/1112+19750975..19758056expressed protein
LOC_Os12g32760Os.10344.1.S1_at10/1112+19759781..19762953Sugar transporter family protein, expressed
LOC_Os12g32770OsAffx.31309.1.S1_at6/1112+19763514..19765561expressed protein
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18223.1.S1_s_at--709--7591Chr12:19757669..19757693 (25 bp)
GGGAAGAACGGCCTCTACGCCACCG
LOC_Os12g32750
Os.18223.1.S1_s_at--19--9951Chr12:19757684..19757708 (25 bp)
TACGCCACCGGATTCACCAAGAGGG
LOC_Os12g32750
Os.18223.1.S1_s_at--478--4511Chr12:19757804..19757828 (25 bp)
GCCGACCACCATGAGACATACATAG
LOC_Os12g32750
Os.18223.1.S1_s_at--101--271Chr12:19757845..19757869 (25 bp)
ATATGTGTCTTATAATTAGCATCGT
LOC_Os12g32750
Os.18223.1.S1_s_at--1023--3131Chr12:19757858..19757882 (25 bp)
AATTAGCATCGTAAGATTTTCTTGT
LOC_Os12g32750
Os.18223.1.S1_s_at--1123--10351Chr12:19757891..19757915 (25 bp)
TTTTTGTTCTGTCGTCGCTGTGTTG
LOC_Os12g32750
Os.18223.1.S1_s_at--367--9411Chr12:19757902..19757926 (25 bp)
TCGTCGCTGTGTTGGGAGAAATGTA
LOC_Os12g32750
Os.18223.1.S1_s_at--407--2991Chr12:19757921..19757945 (25 bp)
AATGTACATGTCTGAGCGTCTGCTG
LOC_Os12g32750
Os.18223.1.S1_s_at--777--1631Chr12:19757935..19757959 (25 bp)
AGCGTCTGCTGGTCGAGAATGAGAT
LOC_Os12g32750
Os.18223.1.S1_s_at--1057--8891Chr12:19757954..19757978 (25 bp)
TGAGATCAATCATCGAAGTGCGTAT
LOC_Os12g32750
Os.18223.1.S1_s_at--227--3551Chr12:19757964..19757988 (25 bp)
CATCGAAGTGCGTATGTGCATGTGT
LOC_Os12g32750
Target Sequence 
GGGAAGAACGGCCTCTACGCCACCGGATTCACCAAGAGGGGCCTCCAGGGCACCTCCTACGACGCCGCCATGATCGCCGC
CGACATCGCCCGCCGCTGGACCAAGTCCCTCGCCGGCCCTACTGCCGCCGCCGACGCCGACCACCATGAGACATACATAG
CTAATTAATTATATATATATGTGTCTTATAATTAGCATCGTAAGATTTTCTTGTTNTTNTTTTTTTTGTTCTGTCGTCGC
TGTGTTGGGAGAAATGTACATGTCTGAGCGTCTGCTGGTCGAGAATGAGATCAATCATCGAAGTGCGTATGTGCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18223.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis