Browse Element(s) Details


OsAffx.31309.1.S1_at

Description tigr:9639.m03181
TID=OsAffx.31309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3538011/11hypothetical protein
LOC_Os11g325906/11transposon protein, putative, Mariner sub-class
LOC_Os12g327706/11expressed protein
LOC_Os06g332305/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g35400Os.56290.1.S1_at11/1111+20242430..20247067AMP-binding enzyme family protein, expressed
LOC_Os11g35410OsAffx.7301.1.S1_at11/1111+20247547..20250627Leucine Rich Repeat family protein, expressed
LOC_Os11g35420Os.24530.1.S1_at11/1111+20253546..20256172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31309.1.S1_at--495--10733Chr12:19763584..19763607 (24 bp)
TTGAATGTCCGCCTAGAAGAAGATA
LOC_Os12g32770
OsAffx.31309.1.S1_at--16--9771Chr11:20232984..20233008 (25 bp)
TAAGGACGGCAATGTTCCCTTCCAT
LOC_Os11g35380
OsAffx.31309.1.S1_at--50--10694Chr12:19763626..19763650 (25 bp)
TTCCATCTCAACGAGCCAATATTGG
LOC_Os12g32770
OsAffx.31309.1.S1_at--1148--10854Chr12:19763647..19763669 (23 bp)
TTGGAGGATCACAACGTTAATGGAT
LOC_Os12g32770
OsAffx.31309.1.S1_at--981--814Chr12:19763763..19763785 (23 bp)
ATGGATTTGATTTGAACATGCCACT
LOC_Os12g32770
OsAffx.31309.1.S1_at--925--10033Chr12:19763809..19763832 (24 bp)
TAGATTTTTTACAAAACCACGCTGA
LOC_Os12g32770
OsAffx.31309.1.S1_at--123--2371Chr11:20232678..20232797 (25 bp)
AAACCACGCTGAACATGCTGTACAT
LOC_Os11g35380
OsAffx.31309.1.S1_at--641--9111Chr11:20232663..20232687 (25 bp)
TGCTGTACATAACCAAGCTCCTATT
LOC_Os11g35380
OsAffx.31309.1.S1_at--95--2691Chr11:20232649..20232673 (25 bp)
AAGCTCCTATTGAAGGACAGCATCG
LOC_Os11g35380
OsAffx.31309.1.S1_at--269--2933Chr12:19763958..19764147 (25 bp)
AAGGACAGCATCGAAGGAAGAACAT
LOC_Os12g32770
OsAffx.31309.1.S1_at--640--2713Chr11:18729507..18729549 (25 bp)
AAGCATTGTTGAAGGACAGCAAGAA
LOC_Os11g32590
Target Sequence 
TTGAATGTCCGCCTAGAAGAAGATAAGGACGGCAATGTTCCCTTCCATCTCAACGAGCCAATATTGGAGGATCACAACGT
TAATGGATTTGATTTGAACATGCCACTAGATGAATTTGGTGTAGTTGATTTAGATTTTTTACAAAACCACGCTGAACATG
CTGTACATAACCAAGCTCCTATTGAAGGACAGCATCGAAGGAAGAACATGACAGAAGAAGTCACAAAACAAGTGTACAAA
GCATTGTTGAAGGACAGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis