Browse Element(s) Details


OsAffx.31273.1.S1_x_at

Description tigr:9640.m03183
TID=OsAffx.31273.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3260011/11hypothetical protein
LOC_Os06g3322011/11hypothetical protein
LOC_Os11g3537010/11hypothetical protein
LOC_Os06g247402/11hypothetical protein
LOC_Os05g313101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32610NANA11+18734918..18736852Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32620OsAffx.31274.1.S1_at6/1111+18741746..18743334Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32630OsAffx.19126.1.S1_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32630OsAffx.19126.1.S1_x_at4/1111+18746153..18748022hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31273.1.S1_x_at--489--3714Chr11:20230783..20230807 (25 bp)
CTAGAATCGGAGATGGCGTTGGACT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--59--10854Chr11:20230801..20230849 (25 bp)
TTGGACTCCGTCGAGGTGCCGGACT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--508--4694Chr11:20230895..20230919 (25 bp)
GCGGCGTCTTCGGAGAAGCATGCTT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--212--10835Chr11:20230953..20230977 (25 bp)
TTGTGGCCTTTTACATGAAGACTAC
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--369--674Chr11:20230967..20230991 (25 bp)
ATGAAGACTACGACCTCATAGCAAG
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--542--5374Chr11:20230969..20230993 (25 bp)
GAAGACTACGACCTCATAGCAAGGT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--230--5694Chr11:20230972..20230996 (25 bp)
GACTACGACCTCATAGCAAGGTTTT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--1094--9934Chr11:20230975..20230997 (23 bp)
TACGACCTCATAGCAAGGTTTTTGC
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--860--6794Chr06:19344817..19344841 (25 bp)
GTTATACATTCCTGATGTGGAGAAA
LOC_Os06g33220
OsAffx.31273.1.S1_x_at--1096--7974Chr11:20231059..20231083 (25 bp)
GGATGGTGAAACCATACTTCTTCCT
LOC_Os11g35370
OsAffx.31273.1.S1_x_at--916--355Chr11:20231093..20231117 (25 bp)
ATCAAAAAGTTGGACGAGATCTACA
LOC_Os11g35370
Target Sequence 
CTAGAATCGGAGATGGCGTTGGACTCCGTCGAGGTGCCGGACTCNGTCNAGGTGGTNNNNNANNCCNNNNNNNNNNNNNN
NNNNNNNNNNNNGNNNNNNNNNNNNTCCGTCGAGGTGGTGCANTGTCCTCGCTGCGGCACATTCCANGCTGGCGGCGTCT
TCGGAGAAGCATGCTTCCAAGCTCGCCGCCGTGCTCGCANGTGTGCCCNTTGTGGCCTTTTACATGAAGACTACGACCTC
ATAGCAAGGTTTTTGCNTAACATGGAAAAGTTTGATTGTGAGTTATACATTCCTGATGTGGAGAAACTTNAAATGGATGG
TGAAACCATACTTCTTCCTNAGCANGTTATCAAAAAGTTGGACGAGATCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31273.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis