Browse Element(s) Details


OsAffx.31274.1.S1_at

Description tigr:9639.m02966
TID=OsAffx.31274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chalcone and stilbene synthases, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g326206/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32610NANA11+18734918..18736852Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32620OsAffx.31274.1.S1_at6/1111+18741746..18743334Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32630OsAffx.19126.1.S1_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32630OsAffx.19126.1.S1_x_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32640OsAffx.31275.1.S1_x_at11/1111+18761999..18762303hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31274.1.S1_at--886--3551Chr11:18742148..18742172 (25 bp)
CATCACCGGGCAGCTCAGGAAGGGC
LOC_Os11g32620
OsAffx.31274.1.S1_at--764--1871Chr11:18742101..18742125 (25 bp)
ACGAGATGCCGTCCCTCGTCGGCGA
LOC_Os11g32620
OsAffx.31274.1.S1_at--298--4671Chr11:18741999..18742023 (25 bp)
GCTGGAACGGGCTGTTCTGGGCGGT
LOC_Os11g32620
OsAffx.31274.1.S1_at--93--8411Chr11:18741963..18741987 (25 bp)
GGCGCGCGATCCTGGACAGCGTGGA
LOC_Os11g32620
OsAffx.31274.1.S1_at--270--7571Chr11:18741864..18741888 (25 bp)
GGGCGACGGTGTTCTTCGTGCTCGA
LOC_Os11g32620
OsAffx.31274.1.S1_at--308--7111Chr11:18741763..18741787 (25 bp)
GTCACCGTCGAGACGATGGTGCTGC
LOC_Os11g32620
OsAffx.31274.1.S1_at--478--4551Chr11:18741738..18741762 (25 bp)
GCGCCGTGCACTTCTGATCCTTGAA
NONE
OsAffx.31274.1.S1_at--114--10611Chr11:18741727..18741751 (25 bp)
TTCTGATCCTTGAAGCTCTCTCAAT
NONE
OsAffx.31274.1.S1_at--863--2691Chr11:18741716..18741739 (24 bp)
AAGCTCTCTCAATTTCATTTCGGAC
NONE
OsAffx.31274.1.S1_at--1161--3571NONE
CATTTCGGACATACCATGATTCTGT
NONE
OsAffx.31274.1.S1_at--799--8131NONE
GGACATACCATGATTCTGTTCGAAT
NONE
Target Sequence 
CATCACCGGGCAGCTCAGGAAGGGCGGCCTCGACTACCACATCGCCCACGAGATGCCGTCCCTCGTCGGCGAGCACATCG
CCCACTGCGTCGCCGACGCGCTCGCCCCGCTCGGCATCGGCATCGACGTCGACGTCGACGGCGGCGGCGGCTGGAACGGG
CTGTTCTGGGCGGTGCACCCCGGCGGGCGCGCGATCCTGGACAGCGTGGAGGCGCGGCTGGCGCTGGCGCCCGGGAAGCT
GGCGGCGAACCGCCGCGTGCTGGGCGAGTTCGGGAACATGGCCGGGGCGACGGTGTTCTTCGTGCTCGACGAGCTGCGGC
GCGCGCGCGGCGAGGGGGAGCAGCGCGGCTGCGAGTGGGGCGTCGCCGTGGCGTTCTGGGCCGGGCGTCACCGTCGAGAC
GATGGTGCTGCGCGCCGTGCACTTCTGATCCTTGAAGCTCTCTCAATTTCATTTCGGACATACCATGATTCTGTTCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis