Browse Element(s) Details


OsAffx.31275.1.S1_x_at

Description tigr:9639.m02968
TID=OsAffx.31275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32620OsAffx.31274.1.S1_at6/1111+18741746..18743334Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32630OsAffx.19126.1.S1_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32630OsAffx.19126.1.S1_x_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32640OsAffx.31275.1.S1_x_at11/1111+18761999..18762303hypothetical protein
LOC_Os11g32650Os.57449.1.S1_x_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.54454.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.12416.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32660NANA11+18786857..18790299transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31275.1.S1_x_at--698--1791Chr11:18762137..18762158 (22 bp)
ACCGCAGCTCAAACCGGTGAGGCTG
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--747--3391Chr11:18762133..18762157 (25 bp)
CAGCTCAAACCGGTGAGGCTGAGGC
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--755--3951Chr11:18762109..18762133 (25 bp)
CGGAGCGCAAAGGACGTGAACAAGC
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--84--1651Chr11:18762106..18762130 (25 bp)
AGCGCAAAGGACGTGAACAAGCTCA
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--733--8111Chr11:18762098..18762122 (25 bp)
GGACGTGAACAAGCTCAGGGCCTCG
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--341--1091Chr11:18762082..18762106 (25 bp)
AGGGCCTCGCCGCTGGATGCCGGGC
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--254--8571Chr11:18762069..18762093 (25 bp)
TGGATGCCGGGCAGCGCCTTCGCCA
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--658--6131Chr11:18762036..18762060 (25 bp)
GAGGTGTTGACTTGGGCCAAAAGCA
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--359--1051Chr11:18762035..18762059 (25 bp)
AGGTGTTGACTTGGGCCAAAAGCAA
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--120--6611Chr11:18762031..18762055 (25 bp)
GTTGACTTGGGCCAAAAGCAACAAC
LOC_Os11g32640
OsAffx.31275.1.S1_x_at--902--8931Chr11:18762029..18762053 (25 bp)
TGACTTGGGCCAAAAGCAACAACCA
LOC_Os11g32640
Target Sequence 
ACCGCAGCTCAAACCGGTGAGGCTGAGGCGGAGCGCAAAGGACGTGAACAAGCTCAGGGCCTCGCCGCTGGATGCCGGGC
AGCGCCTTCGCCAGCAAGGAGGAGGTGTTGACTTGGGCCAAAAGCAACAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31275.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis