Browse Element(s) Details


Os.12416.1.S1_at

Description gb:AB000801.2
DB_XREF= gi:13447615
TID=Os.12416.1
CNT=119
FEA=FLmRNA
TIER=FL+Stack
STK=34
UG=Os.12416 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for chalcone synthase, complete cds.
PROD=chalcone synthase
FL= gb:AB000801.2 gb:AK067810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3265011/11Chalcone synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32640OsAffx.31275.1.S1_x_at11/1111+18761999..18762303hypothetical protein
LOC_Os11g32650Os.57449.1.S1_x_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.54454.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.12416.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32660NANA11+18786857..18790299transposon protein, putative, Mutator sub-class
LOC_Os11g32670OsAffx.19127.1.S1_at11/1111+18790906..18791428GRF zinc finger family protein
LOC_Os11g32680Os.14491.2.S1_x_at3/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32680Os.47463.1.S1_x_at2/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32690NANA11+18799927..18802122transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12416.1.S1_at--208--9151Chr11:18776623..18776647 (25 bp)
TGCGTGCTCTTCATCCTCGACGAGA
LOC_Os11g32650
Os.12416.1.S1_at--895--9951Chr11:18776421..18776445 (25 bp)
TACGCCACACGTCATCTTTTATCAT
LOC_Os11g32650
Os.12416.1.S1_at--960--1891Chr11:18776413..18776437 (25 bp)
ACGTCATCTTTTATCATCGATCATA
LOC_Os11g32650
Os.12416.1.S1_at--1054--1191Chr11:18776301..18776325 (25 bp)
AGTTATTCCCTTTTGCCGTGTGTTG
LOC_Os11g32650
Os.12416.1.S1_at--762--10271Chr11:18776290..18776314 (25 bp)
TTTGCCGTGTGTTGGTAGGGATAAA
LOC_Os11g32650
Os.12416.1.S1_at--152--151Chr11:18776248..18776272 (25 bp)
ATTACTTTGTTTTGCATGTGTCATG
LOC_Os11g32650
Os.12416.1.S1_at--851--9051Chr11:18776236..18776260 (25 bp)
TGCATGTGTCATGTATGGGTGGTTT
LOC_Os11g32650
Os.12416.1.S1_at--474--7491Chr11:18776218..18776242 (25 bp)
GTGGTTTGGTTGGTAGTAGCATATA
LOC_Os11g32650
Os.12416.1.S1_at--14--7651Chr11:18776172..18776196 (25 bp)
GGGAGGTCAATTAAGTGTCATGGAT
LOC_Os11g32650
Os.12416.1.S1_at--575--2371Chr11:18776132..18776156 (25 bp)
AAACCTGTGTAAGAGATGCTTGGCT
LOC_Os11g32650
Os.12416.1.S1_at--881--6331Chr11:18776118..18776142 (25 bp)
GATGCTTGGCTGTTACTATTCAATT
LOC_Os11g32650
Target Sequence 
TGCGTGCTCTTCATCCTCGACGAGATGCGCAAGCGCTCCGCCGAGGACGGCCACGCCACCACCGGCGAGGGCATGGACTG
GGGCGTCCTCTTCGGCTTCGGCCCCGGCCTCACCGTNGAGACCGTCGTCCTCCACAGCGTCCCCATCACCGCCGGCGCCG
CCGCCTGAGNGCTCCGCCNTGGTCGCCGCCGGCCGGCCTACGTACGCCACACGTCATCTTTTATCATCGATCATAAAAAA
AAATTATATATATATCGATATCGATATANATATATTTCCTAATAATAACTACTACTACAATAACAACGTTATCGAATTAA
AAAGTTATTCCCTTTTGCCGTGTGTTGGTAGGGATAAAAAGTGAAAAAAAAAATTATTACTTTGTTTTGCATGTGTCATG
TATGGGTGGTTTGGTTGGTAGTAGCATATATATGTATACTGAAAAGAGAAAGGGAGGTCAATTAAGTGTCATGGATGGTG
AGGTTTATTGTAAACCTGTGTAAGAGATGCTTGGCTGTTACTATTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis