Browse Element(s) Details


Os.57449.1.S1_x_at

Description gb:D29697.1
DB_XREF= gi:474019
TID=Os.57449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57449 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to chalcone synthase gene
DEF=Rice mRNA, partial homologous to chalcone synthase gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3265011/11Chalcone synthase, putative, expressed
LOC_Os08g254301/11Protein kinase domain containing protein, expressed
LOC_Os07g114401/11Chalcone synthase, putative, expressed
LOC_Os06g100001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32640OsAffx.31275.1.S1_x_at11/1111+18761999..18762303hypothetical protein
LOC_Os11g32650Os.57449.1.S1_x_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.54454.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.12416.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32660NANA11+18786857..18790299transposon protein, putative, Mutator sub-class
LOC_Os11g32670OsAffx.19127.1.S1_at11/1111+18790906..18791428GRF zinc finger family protein
LOC_Os11g32680Os.14491.2.S1_x_at3/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32680Os.47463.1.S1_x_at2/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32690NANA11+18799927..18802122transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0004672molecular_functionprotein kinase activity
GO:0016210molecular_functionnaringenin-chalcone synthase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57449.1.S1_x_at--981--9992Chr11:18779370..18779394 (25 bp)
TAGCTAAGCTCACCGATCGTCGTCT
LOC_Os11g32650
Os.57449.1.S1_x_at--843--9751Chr11:18779366..18779390 (25 bp)
TAAGCTCACCGATCGTCGTCTTCGT
LOC_Os11g32650
Os.57449.1.S1_x_at--520--514Chr07:3733556..3733576 (21 bp)
ATCGTCGTCTTCGTCATCGCCGGTG
NONE
Os.57449.1.S1_x_at--249--9411Chr11:18779351..18779375 (25 bp)
TCGTCTTCGTCATCGCCGGTGACCT
LOC_Os11g32650
Os.57449.1.S1_x_at--176--10631Chr11:18779346..18779370 (25 bp)
TTCGTCATCGCCGGTGACCTGGTGA
LOC_Os11g32650
Os.57449.1.S1_x_at--798--10433Chr08:15343761..15343780 (20 bp)
TTAGTCGAGAGAGATGGCGGCGGCG
LOC_Os08g25430
Os.57449.1.S1_x_at--151--8431Chr11:18779255..18779279 (25 bp)
GGCCGGCGACGGTGCTGGCGATCGG
LOC_Os11g32650
Os.57449.1.S1_x_at--111--5692Chr11:18779196..18779220 (25 bp)
GACTACCCGGACTACTACTTCAGGA
LOC_Os11g32650
Os.57449.1.S1_x_at--592--8351Chr11:18779193..18779217 (25 bp)
TACCCGGACTACTACTTCAGGATCA
LOC_Os11g32650
Os.57449.1.S1_x_at--587--3951Chr11:18779189..18779213 (25 bp)
CGGACTACTACTTCAGGATCACCAA
LOC_Os11g32650
Os.57449.1.S1_x_at--297--5711Chr11:18779187..18779211 (25 bp)
GACTACTACTTCAGGATCACCAAGA
LOC_Os11g32650
Target Sequence 
TAGCTAAGCTCACCGATCGTCGTCTTCGTCATCGCCGGTGACCTGGTGANTTAGTCGAGAGAGATGGCGGCGGCGGTGAC
GGNNGAGGAGGTGAGGAGGGCGCAGAGGGCGGAGGGGCCGGCGACGGTGCTGGCGATCGGNACGGCGACGCGGCGGAACT
GCGTNTACCAGGCCGACTACCCGGACTACTACTTCAGGATCACCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57449.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis