Browse Element(s) Details


OsAffx.19127.1.S1_at

Description tigr:9639.m02971
TID=OsAffx.19127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3267011/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32650Os.57449.1.S1_x_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.54454.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32650Os.12416.1.S1_at11/1111+18776052..18779509Chalcone synthase, putative, expressed
LOC_Os11g32660NANA11+18786857..18790299transposon protein, putative, Mutator sub-class
LOC_Os11g32670OsAffx.19127.1.S1_at11/1111+18790906..18791428GRF zinc finger family protein
LOC_Os11g32680Os.14491.2.S1_x_at3/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32680Os.47463.1.S1_x_at2/1111+18793682..18797391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32690NANA11+18799927..18802122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32700OsAffx.19128.1.S1_at11/1111+18807209..18807644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19127.1.S1_at--315--1471Chr11:18791364..18791388 (25 bp)
AGAAGGTACAACTGCCATTGATTCA
LOC_Os11g32670
OsAffx.19127.1.S1_at--374--6571Chr11:18791345..18791369 (25 bp)
GATTCAGTGCCCTTTATGCAAGGAG
LOC_Os11g32670
OsAffx.19127.1.S1_at--968--5971Chr11:18791323..18791347 (25 bp)
GAGAACACCGTCGTGGTGCGCACAT
LOC_Os11g32670
OsAffx.19127.1.S1_at--729--7491Chr11:18791311..18791335 (25 bp)
GTGGTGCGCACATCGAGGACCCCTA
LOC_Os11g32670
OsAffx.19127.1.S1_at--205--3551Chr11:18791301..18791325 (25 bp)
CATCGAGGACCCCTACTAATCTGGG
LOC_Os11g32670
OsAffx.19127.1.S1_at--916--8831Chr11:18791179..18791279 (25 bp)
TGATCACGAGAAAGATGGCTCTGGT
LOC_Os11g32670
OsAffx.19127.1.S1_at--96--3791Chr11:18791161..18791185 (25 bp)
CTCTGGTTGCAACTTCTGGTATTGG
LOC_Os11g32670
OsAffx.19127.1.S1_at--827--5251Chr11:18791050..18791074 (25 bp)
GAATGCATCTAAGTTCGATGGCGAT
LOC_Os11g32670
OsAffx.19127.1.S1_at--1040--8451Chr11:18791032..18791056 (25 bp)
TGGCGATGTAGTTTTGAGGCAAGAC
LOC_Os11g32670
OsAffx.19127.1.S1_at--512--8251Chr11:18790993..18791017 (25 bp)
GGCACTGACAGATGTGGTGTCCATT
LOC_Os11g32670
OsAffx.19127.1.S1_at--324--2691Chr11:18790944..18790968 (25 bp)
AAGCTCATGTTAGTAGTAGGTTCAA
LOC_Os11g32670
Target Sequence 
AGAAGGTACAACTGCCATTGATTCAGTGCCCTTTATGCAAGGAGAACACCGTCGTGGTGCGCACATCGAGGACCCCTACT
AATCTGGGGCGCATTTTCTACACTTGCCCTGATCACGAGAAAGATGGCTCTGGTTGCAACTTCTGGTATTGGGAGGAAGG
GTACATGAAGTACTTGAAGAGGAATGGCTTCATTGATGGAGAAGAGGCTACAGAGGTGAAGAAGGCTGCAGAGCTGAAGA
ATGCATCTAAGTTCGATGGCGATGTAGTTTTGAGGCAAGACGATGAACTGAAGAAGGCACTGACAGATGTGGTGTCCATT
GGAAGAGAGTTAGTAGTTGTAATGAAGCTCATGTTAGTAGTAGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis