Browse Element(s) Details


OsAffx.19126.1.S1_x_at

Description tigr:9639.m02967
TID=OsAffx.19126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g326304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32610NANA11+18734918..18736852Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32620OsAffx.31274.1.S1_at6/1111+18741746..18743334Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32630OsAffx.19126.1.S1_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32630OsAffx.19126.1.S1_x_at4/1111+18746153..18748022hypothetical protein
LOC_Os11g32640OsAffx.31275.1.S1_x_at11/1111+18761999..18762303hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19126.1.S1_x_at--691--491Chr11:18747876..18747900 (25 bp)
ATCGGCGCTGGGTGGAGCAGGTTCA
LOC_Os11g32630
OsAffx.19126.1.S1_x_at--256--6611Chr11:18746562..18746586 (25 bp)
GTTGGCGGATGAAATTGGTACTTAA
LOC_Os11g32630
OsAffx.19126.1.S1_x_at--750--591Chr11:18746515..18746539 (25 bp)
ATGCGACCCCACGAAGGAGGCGTGT
LOC_Os11g32630
OsAffx.19126.1.S1_x_at--263--2911Chr11:18746502..18746526 (25 bp)
AAGGAGGCGTGTCAATGGCGAGGGC
LOC_Os11g32630
OsAffx.19126.1.S1_x_at--364--5171Chr11:18745667..18745689 (23 bp)
GCAAGCGCACGCAGAGTACTTGTGA
NONE
OsAffx.19126.1.S1_x_at--954--1831NONE
ACGCAGAGTACTTGTGAGAAGTGGA
NONE
OsAffx.19126.1.S1_x_at--502--2371Chr11:18745682..18745706 (25 bp)
AAACTGCAACCAAAATCGCAAGCGC
NONE
OsAffx.19126.1.S1_x_at--323--531Chr11:18745668..18745692 (25 bp)
ATCGCAAGCGCACGCAGAGTACTTG
NONE
OsAffx.19126.1.S1_x_at--515--1231Chr11:18745653..18745677 (25 bp)
AGAGTACTTGTACGTTAGCTACCGC
NONE
OsAffx.19126.1.S1_x_at--1108--7011Chr11:18745650..18745674 (25 bp)
GTACTTGTACGTTAGCTACCGCTGC
NONE
OsAffx.19126.1.S1_x_at--255--10811Chr11:18745646..18745670 (25 bp)
TTGTACGTTAGCTACCGCTGCTGGC
NONE
Target Sequence 
ATCGGCGCTGGGTGGAGCAGGTTCAGCCATGGAGGACGGTGGAGGCACCGCACGCCTGCCGCCGCTGCACTCTCCCGCCG
ACGCTGATGCTCCACCGCCACGCTCGCCTGCCGCCGCCGCTCCGCCTGCCTCCGGTCGCGTGTCGCTGCCACCGCCACCT
CTCCACCTCTACCGCTGGCTCGAGGCGACGGGGACGGGGAGTGGAGAGAGTTGGCGGATGAAATTGGTACTTAACGACTA
TTACGGGCCCTCCCCCATGCGACCCCACGAAGGAGGCGTGTCAATGGCGAGGGCGGCGGCCGTCCCCCGAGCGGAGGGCG
GCGGAGGAGGTGAGAAGTGGAAAAACTGCAACCAAAATCGCAAGCGCACGCAGAGTACTTGTGAGAAGTGGAAAAACTGC
AACCAAAATCGCAAGCGCACGCAGAGTACTTGTACGTTAGCTACCGCTGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19126.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis