Browse Element(s) Details


OsAffx.31273.1.S1_at

Description tigr:9640.m03183
TID=OsAffx.31273.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3322011/11hypothetical protein
LOC_Os11g3260011/11hypothetical protein
LOC_Os11g3537011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33180Os.9976.1.S1_at11/116+19314236..19319657expressed protein
LOC_Os06g33190NANA6+19322637..19325038retrotransposon protein, putative, LINE subclass
LOC_Os06g33200Os.10743.1.S1_at11/116+19332880..19333520expressed protein
LOC_Os06g33210Os.23865.1.S1_at11/116+19337636..19343724UDP-galactose transporter family protein, expressed
LOC_Os06g33220OsAffx.31273.1.S1_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.1.S1_x_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.15601.1.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.2.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33230OsAffx.31309.1.S1_at5/116+19345423..19347228transposon protein, putative, Mariner sub-class
LOC_Os06g33240Os.20602.2.S1_x_at11/116+19352633..19354813hAT family dimerisation domain containing protein
LOC_Os06g33250NANA6+19356235..19359919expressed protein
LOC_Os06g33260NANA6+19364943..19367881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33270NANA6+19368197..19371083retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31273.1.S1_at--1129--2094Chr11:20230965..20230989 (25 bp)
ACATGAAGACTACGACCTCATAGCA
LOC_Os11g35370
OsAffx.31273.1.S1_at--870--3514Chr11:20230966..20230990 (25 bp)
CATGAAGACTACGACCTCATAGCAA
LOC_Os11g35370
OsAffx.31273.1.S1_at--370--674Chr11:20230967..20230991 (25 bp)
ATGAAGACTACGACCTCATAGCAAG
LOC_Os11g35370
OsAffx.31273.1.S1_at--590--8994Chr11:20230968..20230992 (25 bp)
TGAAGACTACGACCTCATAGCAAGG
LOC_Os11g35370
OsAffx.31273.1.S1_at--543--5374Chr11:20230969..20230993 (25 bp)
GAAGACTACGACCTCATAGCAAGGT
LOC_Os11g35370
OsAffx.31273.1.S1_at--614--2754Chr11:20230970..20230994 (25 bp)
AAGACTACGACCTCATAGCAAGGTT
LOC_Os11g35370
OsAffx.31273.1.S1_at--1122--1354Chr11:20230971..20230995 (25 bp)
AGACTACGACCTCATAGCAAGGTTT
LOC_Os11g35370
OsAffx.31273.1.S1_at--229--5694Chr11:20230972..20230996 (25 bp)
GACTACGACCTCATAGCAAGGTTTT
LOC_Os11g35370
OsAffx.31273.1.S1_at--901--1994Chr11:20230973..20230997 (25 bp)
ACTACGACCTCATAGCAAGGTTTTT
LOC_Os11g35370
OsAffx.31273.1.S1_at--1095--9934Chr11:20230975..20230997 (23 bp)
TACGACCTCATAGCAAGGTTTTTGC
LOC_Os11g35370
OsAffx.31273.1.S1_at--1097--7974Chr11:20231059..20231083 (25 bp)
GGATGGTGAAACCATACTTCTTCCT
LOC_Os11g35370
Target Sequence 
ACATGAAGACTACGACCTCATAGCAAGGTTTTTGCNTAACATGGAAAAGTTTGATTGTGAGTTATACATTCCTGATGTGG
AGAAACTTNAAATGGATGGTGAAACCATACTTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis