Browse Element(s) Details


Os.9976.1.S1_at

Description gb:AK062190.1
DB_XREF= gi:32972208
TID=Os.9976.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E09, full insert sequence.
FL= gb:AK062190.1 gb:AK119245.1 gb:AK105107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33150Os.46314.2.S1_x_at2/116+19291435..19297893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33150OsAffx.22896.1.S1_x_at1/116+19291435..19297893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160Os.14491.2.S1_x_at5/116+19299327..19304223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33160Os.47463.1.S1_x_at4/116+19299327..19304223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33170OsAffx.27911.1.S1_at11/116+19309708..19310451hypothetical protein
LOC_Os06g33180Os.9976.1.S1_at11/116+19314236..19319657expressed protein
LOC_Os06g33190NANA6+19322637..19325038retrotransposon protein, putative, LINE subclass
LOC_Os06g33200Os.10743.1.S1_at11/116+19332880..19333520expressed protein
LOC_Os06g33210Os.23865.1.S1_at11/116+19337636..19343724UDP-galactose transporter family protein, expressed
LOC_Os06g33220OsAffx.31273.1.S1_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.1.S1_x_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.15601.1.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.2.S1_at1/116+19344488..19345128hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9976.1.S1_at--348--10431Chr06:19319076..19319100 (25 bp)
TTAGTCATGGGACCCTTCCTGGAAA
LOC_Os06g33180
Os.9976.1.S1_at--550--1531Chr06:19319139..19319163 (25 bp)
AGCAGGCTCTTCATCATGTTCAATC
LOC_Os06g33180
Os.9976.1.S1_at--132--411Chr06:19319151..19319175 (25 bp)
ATCATGTTCAATCACCTGTTCCAGA
LOC_Os06g33180
Os.9976.1.S1_at--312--8631Chr06:19319188..19319212 (25 bp)
TGGTGGCAACATTGCGGCTATGCTT
LOC_Os06g33180
Os.9976.1.S1_at--274--8311Chr06:19319203..19319227 (25 bp)
GGCTATGCTTGCTAACAGTATGGAT
LOC_Os06g33180
Os.9976.1.S1_at--931--1751Chr06:19319264..19319288 (25 bp)
ACCTCTGATCGCAACTGGCTGTAAT
LOC_Os06g33180
Os.9976.1.S1_at--629--8411Chr06:19319329..19319353 (25 bp)
GGCCCTGTTTCATTTCAACTGGCAA
LOC_Os06g33180
Os.9976.1.S1_at--1115--2511Chr06:19319356..19319380 (25 bp)
AACTTATATGTTCCTACCGTGCTGT
LOC_Os06g33180
Os.9976.1.S1_at--216--10631Chr06:19319444..19319468 (25 bp)
TTCGTTTGTAGCCATCTTGTGTCAT
LOC_Os06g33180
Os.9976.1.S1_at--173--4791Chr06:19319606..19319630 (25 bp)
GCTCCTGTCTATGCATTTAACCGTT
LOC_Os06g33180
Os.9976.1.S1_at--384--10491Chr06:19319622..19319646 (25 bp)
TTAACCGTTTGAGCTCTGATATTGA
LOC_Os06g33180
Target Sequence 
TTAGTCATGGGACCCTTCCTGGAAACTCTTTCAACTNTGGTGAGACATTTNCCGCTAACACCAAGCAGGCTCTTCATCAT
GTTCAATCACCTGTTCCAGAAGGCAGGGTGCATGGTGGCAACATTGCGGCTATGCTTGCTAACAGTATGGATTATCAGAA
GCAATTGAACTTTAGCACCGGGGCTAGCACCTCTGATCGCAACTGGCTGTAATACAGTTCATGCATNAAAAACACCAACC
ATTCCCTTCGCTGGGCCCTGTTTCATTTCAACTGGCAAGTAACTTATATGTTCCTACCGTGCTGTGTATTTAGGAACTGT
GGATCCTGATGATTTAGTGGTGCTGTGTTAATAGGGGGCTTCTAGTGCTTCGTTTGTAGCCATCTTGTGTCATAAATAAA
AGGGGAAAGTAGTGTAATTTATATTAGTGCGCAATTGTAAAATTCTAATGTTTGTTGAAGATGTAACATNTCTTCGAAAC
TCATGTTGAGTGTTTGTGATTNCAATATTAGCATTATGGTTGGTACANNNGCTCCTGTCTATGCATTTAACCGTTTGAGC
TCTGATATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis