Browse Element(s) Details


Os.23865.1.S1_at

Description gb:AK121890.1
DB_XREF= gi:37991513
TID=Os.23865.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105B22, full insert sequence.
FL= gb:AK121890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3321011/11UDP-galactose transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33180Os.9976.1.S1_at11/116+19314236..19319657expressed protein
LOC_Os06g33190NANA6+19322637..19325038retrotransposon protein, putative, LINE subclass
LOC_Os06g33200Os.10743.1.S1_at11/116+19332880..19333520expressed protein
LOC_Os06g33210Os.23865.1.S1_at11/116+19337636..19343724UDP-galactose transporter family protein, expressed
LOC_Os06g33220OsAffx.31273.1.S1_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.1.S1_x_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.15601.1.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.2.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33230OsAffx.31309.1.S1_at5/116+19345423..19347228transposon protein, putative, Mariner sub-class
LOC_Os06g33240Os.20602.2.S1_x_at11/116+19352633..19354813hAT family dimerisation domain containing protein
LOC_Os06g33250NANA6+19356235..19359919expressed protein
LOC_Os06g33260NANA6+19364943..19367881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33270NANA6+19368197..19371083retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005456molecular_functionCMP-sialic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23865.1.S1_at--736--2011Chr06:19338320..19338344 (25 bp)
ACTCAACTTCAATGGCCATGCTTTT
LOC_Os06g33210
Os.23865.1.S1_at--99--8731Chr06:19338284..19338308 (25 bp)
TGTCTGTATATCTTTTCAATGTGAG
LOC_Os06g33210
Os.23865.1.S1_at--780--8671Chr06:19338125..19338289 (25 bp)
TGTGAGAGCAACACTTCAGCTTTTC
LOC_Os06g33210
Os.23865.1.S1_at--361--5211Chr06:19338037..19338061 (25 bp)
GAATTGCCACAAGCATTGCCAGTTA
LOC_Os06g33210
Os.23865.1.S1_at--991--4271Chr06:19337971..19337995 (25 bp)
CCTGTTGATCAGTGTGTACGGTCTT
LOC_Os06g33210
Os.23865.1.S1_at--58--1571Chr06:19337912..19337936 (25 bp)
AGCTCAGCTTTTGTGAGTAATCCCA
LOC_Os06g33210
Os.23865.1.S1_at--159--7451Chr06:19337854..19337878 (25 bp)
GTGTACAGTGTCATGTTTCAGATAA
LOC_Os06g33210
Os.23865.1.S1_at--1004--3271Chr06:19337811..19337835 (25 bp)
CAAACATGGGTTTACTGCTACACTT
LOC_Os06g33210
Os.23865.1.S1_at--395--1971Chr06:19337798..19337822 (25 bp)
ACTGCTACACTTTGCCAATTTTTTG
LOC_Os06g33210
Os.23865.1.S1_at--56--5271Chr06:19337735..19337759 (25 bp)
GAATCCCTATACATTCTTTAGTTAG
LOC_Os06g33210
Os.23865.1.S1_at--919--2951Chr06:19337705..19337729 (25 bp)
AATGGTTTATTCACCTTGTATCTAA
LOC_Os06g33210
Target Sequence 
ACTCAACTTCAATGGCCATGCTTTTAACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTC
NTAGGCATTGTCATCTGCNATAATTTCCCNGCANATGTATTTTATGCCNTGTGAACATGCTTGTTGAATTGCCACAAGCA
TTGCCAGTTACTTCAAAGTAGGTACATGCCAGTGATGCNACTGTTGTTTAACCTGTTGATCAGTGTGTACGGTCTTNTGA
TTTAAGCAGAAAGGTTAGTTGATTATTTATAGCTCAGCTTTTGTGAGTAATCCCATGGANATCGGAGGCTGCAATCTCCA
CAGNATATGTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCTACACTTTGCC
AATTTTTTGGCAAANAGGTGAAAGCATGCCTTGGAAAAGGANATCCAGAATCCCTATACATTCTTTAGTTAGTGCTTAAT
GGTTTATTCACCTTGTATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis