Browse Element(s) Details


OsAffx.15601.1.S1_at

Description tigr:9634.m02450
TID=OsAffx.15601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2474011/11hypothetical protein
LOC_Os06g332201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24704Os.27856.1.S1_at11/116+14503082..14511951Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24730Os.11724.2.S2_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24730Os.11724.2.S1_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24740OsAffx.15601.1.S1_at11/116+14534000..14534698hypothetical protein
LOC_Os06g24740OsAffx.31273.1.S1_x_at2/116+14534000..14534698hypothetical protein
LOC_Os06g24750NANA6+14535307..14536451transposon protein, putative, Mariner sub-class
LOC_Os06g24760OsAffx.29376.1.S1_x_at3/116+14537250..14539242retrotransposon, putative, centromere-specific
LOC_Os06g24770NANA6+14548905..14550131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_at2/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_x_at1/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24790Os.52609.1.S1_at1/116+14554133..14557764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24800NANA6+14558689..14559387retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15601.1.S1_at--764--7531Chr06:14534102..14534126 (25 bp)
GTGGCACTGGAGTCCGTCGAGACAC
LOC_Os06g24740
OsAffx.15601.1.S1_at--842--4251Chr06:14534192..14534216 (25 bp)
CCGGACTCCGTCAAGGCGCTGGACT
LOC_Os06g24740
OsAffx.15601.1.S1_at--539--3951Chr06:14534298..14534322 (25 bp)
CGGACTCCGTCGAGTTTCTGTGTGC
LOC_Os06g24740
OsAffx.15601.1.S1_at--724--6071Chr06:14534309..14534333 (25 bp)
GAGTTTCTGTGTGCTCGCTGCGGCA
LOC_Os06g24740
OsAffx.15601.1.S1_at--817--7531Chr06:14534346..14534370 (25 bp)
GTGGCATCTTCGGAGAAGCCTACTT
LOC_Os06g24740
OsAffx.15601.1.S1_at--130--1451Chr06:14534359..14534383 (25 bp)
AGAAGCCTACTTCCAAGCTCACCGT
LOC_Os06g24740
OsAffx.15601.1.S1_at--799--1612Chr06:14534393..14534417 (25 bp)
AGCTGTGCCCGTTGTGGCCTTTTAC
LOC_Os06g24740
OsAffx.15601.1.S1_at--541--5371Chr06:14534420..14534444 (25 bp)
GAAGACTACGATATGCCAGCAAGGT
LOC_Os06g24740
OsAffx.15601.1.S1_at--415--591Chr06:14534432..14534456 (25 bp)
ATGCCAGCAAGGTGGTTGCATGACA
LOC_Os06g24740
OsAffx.15601.1.S1_at--936--811Chr06:14534511..14534535 (25 bp)
ATGGTAACACCATCATTCTGCCCGA
LOC_Os06g24740
OsAffx.15601.1.S1_at--107--431Chr06:14534522..14534546 (25 bp)
ATCATTCTGCCCGAGCAAGTTATAA
LOC_Os06g24740
Target Sequence 
GTGGCACTGGAGTCCGTCGAGACACTGGACTCGGGGATGGCGTTGAACTCCGTCGAGGTCGACGGCGCGTCGGACTCCGT
CGACGTCGTGCCGGACTCCGTCAAGGCGCTGGACTCGGAGATGGCGTTGAACTCCGTCGAGGTCGACGGCGCGTCGGACT
CCGTCGACGTCGTGCCGGACTCCATCAACGTCGTGCCGGACTCCGTCGAGTTTCTGTGTGCTCGCTGCGGCACGTTCCAC
GCTAGTGGCATCTTCGGAGAAGCCTACTTCCAAGCTCACCGTCACGCTCGCAGCTGTGCCCGTTGTGGCCTTTTACATGA
AGACTACGATATGCCAGCAAGGTGGTTGCATGACATGGAAAAGTTTGATTGTGAGATTTACATTCCTGATGTGGAGAATC
TTCAAATGGATGGTAACACCATCATTCTGCCCGAGCAAGTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis