Browse Element(s) Details


Os.11724.2.S1_s_at

Description gb:AK068937.1
DB_XREF= gi:32978961
TID=Os.11724.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003K12, full insert sequence.
FL= gb:AK068937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2473011/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g354241/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24704Os.27856.1.S1_at11/116+14503082..14511951Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24730Os.11724.2.S2_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24730Os.11724.2.S1_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24740OsAffx.15601.1.S1_at11/116+14534000..14534698hypothetical protein
LOC_Os06g24740OsAffx.31273.1.S1_x_at2/116+14534000..14534698hypothetical protein
LOC_Os06g24750NANA6+14535307..14536451transposon protein, putative, Mariner sub-class
LOC_Os06g24760OsAffx.29376.1.S1_x_at3/116+14537250..14539242retrotransposon, putative, centromere-specific
LOC_Os06g24770NANA6+14548905..14550131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_at2/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_x_at1/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24790Os.52609.1.S1_at1/116+14554133..14557764retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11724.2.S1_s_at--1113--991Chr06:14529415..14529439 (25 bp)
AGGTTCCAGGAAAAAGCCTTGCCTG
LOC_Os06g24730
Os.11724.2.S1_s_at--416--10691Chr06:14529433..14529457 (25 bp)
TTGCCTGGTGGATCACTGGGCGCCT
LOC_Os06g24730
Os.11724.2.S1_s_at--803--1951Chr06:14529447..14529471 (25 bp)
ACTGGGCGCCTTCAGGCATCGTAAC
LOC_Os06g24730
Os.11724.2.S1_s_at--740--10651Chr06:14529500..14529524 (25 bp)
TTCCTCGGCAAGTTTTCTCTAGGTG
LOC_Os06g24730
Os.11724.2.S1_s_at--605--8272Chr06:14529588..14529612 (25 bp)
GGCATCGTTTTCGAAGTCTCGTCTT
LOC_Os06g24730
Os.11724.2.S1_s_at--700--9671Chr06:14529641..14529665 (25 bp)
TCAGCCACGCATAGCGAGGGTCGTT
LOC_Os06g24730
Os.11724.2.S1_s_at--535--1571Chr06:14529707..14529731 (25 bp)
AGCGTGTGGTTTTAGGACGTGCCCT
LOC_Os06g24730
Os.11724.2.S1_s_at--735--10091Chr06:14529719..14529743 (25 bp)
TAGGACGTGCCCTGTGGTGCGCATC
LOC_Os06g24730
Os.11724.2.S1_s_at--144--9271Chr06:14529746..14529770 (25 bp)
TCCTCGACAGCTTTCTGTTGTGTTT
LOC_Os06g24730
Os.11724.2.S1_s_at--680--7051Chr06:14529777..14529801 (25 bp)
GTAACTTTTTCTCCTTAATGCATTC
LOC_Os06g24730
Os.11724.2.S1_s_at--1021--9751Chr06:14529792..14529816 (25 bp)
TAATGCATTCGGATGGCCTCCTTTG
LOC_Os06g24730
Target Sequence 
AGGTTCCAGGAAAAAGCCTTGCCTGGTGGATCACTGGGCGCCTTCAGGCATCGTAACCCCTTGGGGCGGTGCGAGGGTAC
CTCTCTTCCTCGGCAAGTTTTCTCTAGGTGAAAACCACATCTTTGTTAGAAGGTGGGCGATGGTGCCGTCCTTGATGGCG
TGACCTCCGTGGTGGCATCGTTTTCGAAGTCTCGTCTTTGTGGTGTTGTCGTGGGCCTAGCGGCGATCAGCCACGCATAG
CGAGGGTCGTTTTGGTGCTAGGCTTCACTCAGTGGTTTGTGCTTTTGTGGTTAGCGTGTGGTTTTAGGACGTGCCCTGTG
GTGCGCATCCGTCCTCGACAGCTTTCTGTTGTGTTTTTTCTTGTAACTTTTTCTCCTTAATGCATTCGGATGGCCTCCTT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11724.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis