Browse Element(s) Details


Os.11724.2.S2_s_at

Description gb:BI810662
DB_XREF= gi:15857850
DB_XREF=K003D01
CLONE=K003D01
TID=Os.11724.2
CNT=16
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.11724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003K12, full insert sequence
FL= gb:AK068937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2473011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24704Os.27856.1.S1_at11/116+14503082..14511951Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24730Os.11724.2.S2_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24730Os.11724.2.S1_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24740OsAffx.15601.1.S1_at11/116+14534000..14534698hypothetical protein
LOC_Os06g24740OsAffx.31273.1.S1_x_at2/116+14534000..14534698hypothetical protein
LOC_Os06g24750NANA6+14535307..14536451transposon protein, putative, Mariner sub-class
LOC_Os06g24760OsAffx.29376.1.S1_x_at3/116+14537250..14539242retrotransposon, putative, centromere-specific
LOC_Os06g24770NANA6+14548905..14550131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_at2/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_x_at1/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24790Os.52609.1.S1_at1/116+14554133..14557764retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11724.2.S2_s_at--576--2372Chr06:14530069..14530093 (25 bp)
AAACTACTTACTCAGAGGATGGCTA
LOC_Os06g24730
Os.11724.2.S2_s_at--575--2451Chr06:14530094..14530118 (25 bp)
AAGAATGTCGAATCTGAGGGTTCAG
LOC_Os06g24730
Os.11724.2.S2_s_at--728--2411Chr06:14530200..14530224 (25 bp)
AAAAATCTGTCCATGTGCGACTCTT
LOC_Os06g24730
Os.11724.2.S2_s_at--554--3511Chr06:14530211..14530235 (25 bp)
CATGTGCGACTCTTTGGTTCTAAAA
LOC_Os06g24730
Os.11724.2.S2_s_at--469--9391Chr06:14530255..14530279 (25 bp)
TCGTTCGCTTTTGAAGTCCAACACA
LOC_Os06g24730
Os.11724.2.S2_s_at--758--3691Chr06:14530385..14530409 (25 bp)
CTAGAACTCTAGATATACCCAGTAG
LOC_Os06g24730
Os.11724.2.S2_s_at--50--9951Chr06:14530400..14530424 (25 bp)
TACCCAGTAGACAGGATTTTGAACA
LOC_Os06g24730
Os.11724.2.S2_s_at--390--2711Chr06:14530448..14530472 (25 bp)
AAGCTTCAAAATTCTTGTGCCAGAA
LOC_Os06g24730
Os.11724.2.S2_s_at--859--8031Chr06:14530478..14530502 (25 bp)
GGAGTAGCCAAGTTTAGTCCTTGTT
LOC_Os06g24730
Os.11724.2.S2_s_at--45--1151Chr06:14530493..14530517 (25 bp)
AGTCCTTGTTTGTATAGGCTATCAA
LOC_Os06g24730
Os.11724.2.S2_s_at--522--911Chr06:14530508..14530532 (25 bp)
AGGCTATCAATCTTTATCAAGTTCA
LOC_Os06g24730
Target Sequence 
AAACTACTTACTCAGAGGATGGCTAAAGAATGTCGAATCTGAGGGTTCAGTTGNAGTTCCATTTCTTGAAGAACCCAGCT
ATGCTGAAAATGGTGTATCAAGGGAGCTGGAATTTGTTAGGGGAGGATCAAAAAAATCTGTCCATGTGCGACTCTTTGGT
TCTAAAATTTCCTTATGGAGCCANACTTCGTTCGCTTTTGAAGTCCAACACANGGGTAATATCTAGATAAGATAGATTGT
CCATACAAGTATGATGTTAGAAGCTTCAGTCAAATATTGTATTCATTATTCTTTATTTAAAGTAGTCANGTTTGATGTCT
AGAACTCTAGATATACCCAGTAGACAGGATTTTGAACANTTTNTAGTGGATGTAAAAATAGCAAGCTTCAAAATTCTTGT
GCCAGAACAAAGGGAGTAGCCAAGTTTAGTCCTTGTTTGTATAGGCTATCAATCTTTATCAAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11724.2.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis