Browse Element(s) Details


Os.10743.1.S1_at

Description gb:AK105345.1
DB_XREF= gi:32990554
TID=Os.10743.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H09, full insert sequence.
FL= gb:AK105345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3320011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33170OsAffx.27911.1.S1_at11/116+19309708..19310451hypothetical protein
LOC_Os06g33180Os.9976.1.S1_at11/116+19314236..19319657expressed protein
LOC_Os06g33190NANA6+19322637..19325038retrotransposon protein, putative, LINE subclass
LOC_Os06g33200Os.10743.1.S1_at11/116+19332880..19333520expressed protein
LOC_Os06g33210Os.23865.1.S1_at11/116+19337636..19343724UDP-galactose transporter family protein, expressed
LOC_Os06g33220OsAffx.31273.1.S1_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.1.S1_x_at11/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.15601.1.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33220OsAffx.31273.2.S1_at1/116+19344488..19345128hypothetical protein
LOC_Os06g33230OsAffx.31309.1.S1_at5/116+19345423..19347228transposon protein, putative, Mariner sub-class
LOC_Os06g33240Os.20602.2.S1_x_at11/116+19352633..19354813hAT family dimerisation domain containing protein
LOC_Os06g33250NANA6+19356235..19359919expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10743.1.S1_at--824--9011Chr06:19333448..19333472 (25 bp)
TGCAAGATTCAGCACAAATGGGATC
LOC_Os06g33200
Os.10743.1.S1_at--829--2291Chr06:19333433..19333457 (25 bp)
AAATGGGATCGTTGGGCCCTGCTGT
LOC_Os06g33200
Os.10743.1.S1_at--651--5851Chr06:19333146..19333170 (25 bp)
GACCAGTACTGAAGCTTGCTGTGCT
LOC_Os06g33200
Os.10743.1.S1_at--697--4731Chr06:19333129..19333153 (25 bp)
GCTGTGCTTCGCCTTGGAGATATTC
LOC_Os06g33200
Os.10743.1.S1_at--275--8051Chr06:19333114..19333138 (25 bp)
GGAGATATTCAGAAGCCGATCGAGC
LOC_Os06g33200
Os.10743.1.S1_at--35--2651Chr06:19333102..19333126 (25 bp)
AAGCCGATCGAGCAGGGTACCAGTA
LOC_Os06g33200
Os.10743.1.S1_at--532--6971Chr06:19333086..19333110 (25 bp)
GTACCAGTAACTGCATGATGCTAAT
LOC_Os06g33200
Os.10743.1.S1_at--183--6551Chr06:19333059..19333083 (25 bp)
GATTAGGAGCGCTCTATATATATTA
LOC_Os06g33200
Os.10743.1.S1_at--761--10131Chr06:19333011..19333035 (25 bp)
TATGCTGAGCTCGTGTTAATCTGTC
LOC_Os06g33200
Os.10743.1.S1_at--691--3971Chr06:19333000..19333024 (25 bp)
CGTGTTAATCTGTCATCCGCATATA
LOC_Os06g33200
Os.10743.1.S1_at--585--3111Chr06:19332940..19332964 (25 bp)
AATATTTCCTACTACTACGTTCATA
LOC_Os06g33200
Target Sequence 
TGCAAGATTCAGCACAAATGGGATCGTTGGGCCCTGCTGTTGTGGTGAGCGCGAGCGCGGCGAAGATGGCCGGCGGCGGG
CAGCAGCCGTCGACGGAGAGGAAGGAGACGTCGTCGGCGTTCGGCGGCGGGTGCTGCGGCGGCGGCTTCCAGATGCCNGC
TGCACTACCCGCGGTACAAGAAGGCGGACTACGAGGCGATGCCGGAGTGGCGCGTGGACTGCCTCCTCCGGGAGTACGGC
CTCCCCGTCGACGGCGGCGTGGAGGAGAAGCGGAGGTTCGCCNATGGGCGCCTTCCTCTGGCCCGACCAGTACTGAAGCT
TGCTGTGCTTCGCCTTGGAGATATTCAGAAGCCGATCGAGCAGGGTACCAGTAACTGCATGATGCTAATTNGATTAGGAG
CGCTCTATATATATTAATTAATCTATTATGTGTTTTTATTATGCTGAGCTCGTGTTAATCTGTCATCCGCATATAANGGC
GCCATGGAAATATGGAATGATGATGTTGTAAATATTTCCTACTACTACGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis