Browse Element(s) Details


OsAffx.19125.1.S1_at

Description tigr:9639.m02960
TID=OsAffx.19125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3255011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32610NANA11+18734918..18736852Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19125.1.S1_at--875--2531Chr11:18710282..18710306 (25 bp)
AACTCCCTGTCGCAGGAGGAGTACA
LOC_Os11g32550
OsAffx.19125.1.S1_at--46--9311Chr11:18710279..18710303 (25 bp)
TCCCTGTCGCAGGAGGAGTACACCG
LOC_Os11g32550
OsAffx.19125.1.S1_at--986--4171Chr11:18710278..18710302 (25 bp)
CCCTGTCGCAGGAGGAGTACACCGA
LOC_Os11g32550
OsAffx.19125.1.S1_at--417--8711Chr11:18710275..18710299 (25 bp)
TGTCGCAGGAGGAGTACACCGACTG
LOC_Os11g32550
OsAffx.19125.1.S1_at--797--8031Chr11:18710265..18710289 (25 bp)
GGAGTACACCGACTGGTACTTCTGC
LOC_Os11g32550
OsAffx.19125.1.S1_at--779--6071Chr11:18710264..18710288 (25 bp)
GAGTACACCGACTGGTACTTCTGCG
LOC_Os11g32550
OsAffx.19125.1.S1_at--912--1171Chr11:18710263..18710287 (25 bp)
AGTACACCGACTGGTACTTCTGCGT
LOC_Os11g32550
OsAffx.19125.1.S1_at--7--9871Chr11:18710261..18710285 (25 bp)
TACACCGACTGGTACTTCTGCGTCA
LOC_Os11g32550
OsAffx.19125.1.S1_at--651--2171Chr11:18710260..18710284 (25 bp)
ACACCGACTGGTACTTCTGCGTCAC
LOC_Os11g32550
OsAffx.19125.1.S1_at--420--1671Chr11:18710224..18710248 (25 bp)
ACCTCACCAACCTCAAAGACAAGAT
LOC_Os11g32550
OsAffx.19125.1.S1_at--927--3371Chr11:18710220..18710244 (25 bp)
CACCAACCTCAAAGACAAGATGAAG
LOC_Os11g32550
Target Sequence 
AACTCCCTGTCGCAGGAGGAGTACACCGACTGGTACTTCTGCGTCACCAACAGCGACCACCTCACCAACCTCAAAGACAA
GATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis