Browse Element(s) Details


OsAffx.31271.1.S1_at

Description tigr:9639.m02957
TID=OsAffx.31271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3253010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31271.1.S1_at--445--11Chr11:18696144..18696168 (25 bp)
ATCGTTTTCGAAGATCTTTCCTTTG
LOC_Os11g32530
OsAffx.31271.1.S1_at--767--7731Chr11:18696173..18696197 (25 bp)
GGTGAGGACCCTGATCATTCAAACC
LOC_Os11g32530
OsAffx.31271.1.S1_at--1152--3271Chr11:18696192..18696216 (25 bp)
CAAACCCGGGTGATAGTCTGATTAA
LOC_Os11g32530
OsAffx.31271.1.S1_at--930--1931Chr11:18696216..18696240 (25 bp)
ACTGGCAGACTGTTTGTAGACCGAA
LOC_Os11g32530
OsAffx.31271.1.S1_at--198--4731Chr11:18696254..18696278 (25 bp)
GCTGGTCTACCAGATTTGGATAGAT
LOC_Os11g32530
OsAffx.31271.1.S1_at--909--7911Chr11:18696271..18696295 (25 bp)
GGATAGATTTTCACGAGCCCTACGC
LOC_Os11g32530
OsAffx.31271.1.S1_at--1127--3711Chr11:18696290..18696314 (25 bp)
CTACGCCTGCAATGGCTGTGGTTTA
LOC_Os11g32530
OsAffx.31271.1.S1_at--1015--2411Chr11:18696330..18696354 (25 bp)
AAAAGCCCTGGGTAGGCATGGAACT
LOC_Os11g32530
OsAffx.31271.1.S1_at--551--6911Chr11:18696341..18696365 (25 bp)
GTAGGCATGGAACTTCCCCGTGACG
LOC_Os11g32530
OsAffx.31271.1.S1_at--953--8931Chr11:18696361..18696385 (25 bp)
TGACGGCCTGGATGTGAAGCTTTTC
LOC_Os11g32530
OsAffx.31271.1.S1_at--901--1711NONE
ACCACCATCTCGGTTACAGGAAATG
NONE
Target Sequence 
ATCGTTTTCGAAGATCTTTCCTTTGGAAGGGTGAGGACCCTGATCATTCAAACCCGGGTGATAGTCTGATTAACTGGCAG
ACTGTTTGTAGACCGAAAAACCTAGGAGGGGCTGGTCTACCAGATTTGGATAGATTTTCACGAGCCCTACGCCTGCAATG
GCTGTGGTTTAAATGGAAGGAGGACGAAAAGCCCTGGGTAGGCATGGAACTTCCCCGTGACGGCCTGGATGTGAAGCTTT
TCCAAGCAGCCACCACCATCTCGGTTACAGGAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis