Browse Element(s) Details


OsAffx.19123.1.S1_at

Description tigr:9639.m02955
TID=OsAffx.19123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to auxin-responsive-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3251011/11GH3 auxin-responsive promoter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein
LOC_Os11g32520OsAffx.31270.1.S1_at11/1111+18687059..18688619indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19123.1.S1_at--309--10651Chr11:18683406..18683430 (25 bp)
TTCCGGTTCGTGCACCGGCGCAACG
LOC_Os11g32510
OsAffx.19123.1.S1_at--414--8391Chr11:18683390..18683414 (25 bp)
GGCGCAACGTCGTCCTCAGCGTCGA
LOC_Os11g32510
OsAffx.19123.1.S1_at--657--5631Chr11:18683367..18683391 (25 bp)
GACACCGACAAGACCTCCGAGGACG
LOC_Os11g32510
OsAffx.19123.1.S1_at--192--2231Chr11:18683141..18683165 (25 bp)
ACAAGGTGGCACACGTCATGGCGGC
LOC_Os11g32510
OsAffx.19123.1.S1_at--1127--6211Chr11:18683100..18683124 (25 bp)
GAGGCCGGGCTGGACTCGGTGTACC
LOC_Os11g32510
OsAffx.19123.1.S1_at--120--7631Chr11:18683060..18683084 (25 bp)
GGGACAGGTCGATCGGGCCGCTGGA
LOC_Os11g32510
OsAffx.19123.1.S1_at--946--7551Chr11:18683046..18683070 (25 bp)
GGGCCGCTGGAGATCCGTGTCGTGG
LOC_Os11g32510
OsAffx.19123.1.S1_at--1022--9611Chr11:18683000..18683024 (25 bp)
TCATGGACATGTGCGTGTCGCACGG
LOC_Os11g32510
OsAffx.19123.1.S1_at--1118--1931Chr11:18682979..18683003 (25 bp)
ACGGCTCGTCGGTGAACCAGTACAA
LOC_Os11g32510
OsAffx.19123.1.S1_at--772--9411Chr11:18682971..18682995 (25 bp)
TCGGTGAACCAGTACAAGACGCCGC
LOC_Os11g32510
OsAffx.19123.1.S1_at--819--7031Chr11:18682960..18682984 (25 bp)
GTACAAGACGCCGCGGTGCATCAAG
LOC_Os11g32510
Target Sequence 
TTCCGGTTCGTGCACCGGCGCAACGTCGTCCTCAGCGTCGACACCGACAAGACCTCCGAGGACGACCTCCTCCGCGCCGT
CACCGCTGCGAAGCCCCTCCTCGACCCCCTCTCCTGCGTCCTCGCGGAGTACACCGCCTACGCCGACACCTCCTCCATCC
CCGGCCACTACGTCCTCTTCTGGGAGCTCACCCCCTCTCCCTCGCCACCGCCGCCGCCATGCCATGACGACGCCGACGAC
GCAGCCGACATCGGCGAGGACAAGGACAAGGTGGCACACGTCATGGCGGCGTGCTGCGCCGCCGTGGAGGCCGGGCTGGA
CTCGGTGTACCGGCGGTGCAGGAGCCGGGACAGGTCGATCGGGCCGCTGGAGATCCGTGTCGTGGCGCCGGGGGCGTTCG
ACGCGCTCATGGACATGTGCGTGTCGCACGGCTCGTCGGTGAACCAGTACAAGACGCCGCGGTGCATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis