Browse Element(s) Details


OsAffx.19122.1.S1_at

Description tigr:9639.m02950
TID=OsAffx.19122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3246011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32410OsAffx.19120.1.S1_x_at11/1111+18632581..18635944expressed protein
LOC_Os11g32410Os.53128.1.S1_at11/1111+18632581..18635944expressed protein
LOC_Os11g32420Os.14919.1.S1_at7/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420Os.56216.1.S1_at2/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420OsAffx.29313.1.S1_at1/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein
LOC_Os11g32470Os.10277.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32470Os.34337.1.S1_at1/1111+18664509..18670723expressed protein
LOC_Os11g32480Os.17896.1.S1_at10/1111+18671390..18673443TPR repeat region family protein, expressed
LOC_Os11g32490Os.52842.1.S1_at10/1111+18673682..18678222expressed protein
LOC_Os11g32500Os.14791.1.S1_at11/1111+18679054..18680852Rubredoxin family protein, expressed
LOC_Os11g32510OsAffx.19123.1.S1_at11/1111+18682831..18683671GH3 auxin-responsive promoter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19122.1.S1_at--855--5731Chr11:18661237..18661261 (25 bp)
GACTGGATAGTCGACGACGCCGCGA
LOC_Os11g32460
OsAffx.19122.1.S1_at--743--7551Chr11:18661173..18661197 (25 bp)
GGGCCTCCTCCGATGCGACGGATAG
LOC_Os11g32460
OsAffx.19122.1.S1_at--188--7951Chr11:18661020..18661044 (25 bp)
GGATCCCCTCCGAGTTGTGGGACTT
LOC_Os11g32460
OsAffx.19122.1.S1_at--657--4091Chr11:18660980..18661004 (25 bp)
CGACGAGATAGCCTCCGCACAGGAG
LOC_Os11g32460
OsAffx.19122.1.S1_at--843--9291Chr11:18660967..18660991 (25 bp)
TCCGCACAGGAGGTAGCTCGTGCCA
LOC_Os11g32460
OsAffx.19122.1.S1_at--403--1471Chr11:18660918..18660942 (25 bp)
AGAAGGTATGGCTTCACCTCAGCCA
LOC_Os11g32460
OsAffx.19122.1.S1_at--545--9671Chr11:18660900..18660924 (25 bp)
TCAGCCACATCGACCACGATGATTT
LOC_Os11g32460
OsAffx.19122.1.S1_at--931--711Chr11:18660882..18660906 (25 bp)
ATGATTTCCGCGCTCTCGATTCGGC
LOC_Os11g32460
OsAffx.19122.1.S1_at--1143--3811Chr11:18660857..18660881 (25 bp)
CTGCCTCGATTACCTCTCGATCAAG
LOC_Os11g32460
OsAffx.19122.1.S1_at--168--891Chr11:18660810..18660834 (25 bp)
AGGCCAGCGAGTTGCTTGACACGAT
LOC_Os11g32460
OsAffx.19122.1.S1_at--979--5631Chr11:18660793..18660817 (25 bp)
GACACGATCCGCTCGCGTGACTGGG
LOC_Os11g32460
Target Sequence 
GACTGGATAGTCGACGACGCCGCGATGGAGCAGGAGGAGGAGGAGTTCGTGGGCGGCGGCGAGGGGGCCTCCTCCGATGC
GACGGATAGGATCGTCGAGGACGCCGGGATGGACCTGGAGGAGGGGGAGATCGTCGAGGACGCCGCGATGGCCCAGGAGC
AGGGGGAGGGGGAGGAGGTTGAGGGGAAGCAGGACGAGGTCATGGTCGATGGCAAGCGGATCCCCTCCGAGTTGTGGGAC
TTGGTGTCGCTGGACGACGACGAGATAGCCTCCGCACAGGAGGTAGCTCGTGCCAGGATCCGTCATGGCAAGGAGATGGA
GAAGGTATGGCTTCACCTCAGCCACATCGACCACGATGATTTCCGCGCTCTCGATTCGGCCTGCCTCGATTACCTCTCGA
TCAAGCGCTTCTCCGAGCCGATTCTCCAGGCCAGCGAGTTGCTTGACACGATCCGCTCGCGTGACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis