Browse Element(s) Details


Os.53128.1.S1_at

Description gb:AK070941.1
DB_XREF= gi:32980964
TID=Os.53128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067E11, full insert sequence.
FL= gb:AK070941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein
LOC_Os11g32380OsAffx.7275.1.S1_at11/1111+18625705..18626385hypothetical protein
LOC_Os11g32390Os.54073.1.S1_at5/1111+18627166..18628828hypothetical protein
LOC_Os11g32400OsAffx.31268.1.S1_at11/1111+18631460..18631768hypothetical protein
LOC_Os11g32410OsAffx.19120.1.S1_x_at11/1111+18632581..18635944expressed protein
LOC_Os11g32410Os.53128.1.S1_at11/1111+18632581..18635944expressed protein
LOC_Os11g32420Os.14919.1.S1_at7/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420Os.56216.1.S1_at2/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420OsAffx.29313.1.S1_at1/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein
LOC_Os11g32450NANA11+18657056..18657904hypothetical protein
LOC_Os11g32460OsAffx.19122.1.S1_at11/1111+18660731..18661538hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53128.1.S1_at--520--8411Chr11:18632814..18632838 (25 bp)
GGCCCTAGGCTATAGTATGCATAAT
LOC_Os11g32410
Os.53128.1.S1_at--861--6891Chr11:18632800..18632824 (25 bp)
GTATGCATAATGTCACTTGTTATCA
LOC_Os11g32410
Os.53128.1.S1_at--824--7091Chr11:18632789..18632813 (25 bp)
GTCACTTGTTATCATATACTCAACT
LOC_Os11g32410
Os.53128.1.S1_at--504--9711Chr11:18632770..18632794 (25 bp)
TCAACTTCAAACTGTTCAACTGTGG
LOC_Os11g32410
Os.53128.1.S1_at--1036--6751Chr11:18632757..18632781 (25 bp)
GTTCAACTGTGGTGTATGCTATTTT
LOC_Os11g32410
Os.53128.1.S1_at--1035--4871Chr11:18632740..18632764 (25 bp)
GCTATTTTCTCTCTTGTGATGGCAT
LOC_Os11g32410
Os.53128.1.S1_at--676--9511Chr11:18632733..18632757 (25 bp)
TCTCTCTTGTGATGGCATGTACTTA
LOC_Os11g32410
Os.53128.1.S1_at--985--6971Chr11:18632715..18632739 (25 bp)
GTACTTAACTTATGTCCTAGCTTTT
LOC_Os11g32410
Os.53128.1.S1_at--775--4291Chr11:18632700..18632724 (25 bp)
CCTAGCTTTTGTTTAGGAGCTTACA
LOC_Os11g32410
Os.53128.1.S1_at--839--971Chr11:18632686..18632710 (25 bp)
AGGAGCTTACATATATTAGGCAGAG
LOC_Os11g32410
Os.53128.1.S1_at--1140--4731Chr11:18632624..18632648 (25 bp)
GCTGATTTCTTTGTTGTATTGGTAA
LOC_Os11g32410
Target Sequence 
GGCCCTAGGCTATAGTATGCATAATGTCACTTGTTATCATATACTCAACTTCAAACTGTTCAACTGTGGTGTATGCTATT
TTCTCTCTTGTGATGGCATGTACTTAACTTATGTCCTAGCTTTTGTTTAGGAGCTTACATATATTAGGCAGAGTAAAATT
CTATATCTATCATTTCCATCAATGTGTAAAGCTGATTTCTTTGTTGTATTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis