Browse Element(s) Details


Os.54073.1.S1_at

Description gb:AK101702.1
DB_XREF= gi:32986911
TID=Os.54073.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060F02, full insert sequence.
FL= gb:AK101702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g323905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein
LOC_Os11g32380OsAffx.7275.1.S1_at11/1111+18625705..18626385hypothetical protein
LOC_Os11g32390Os.54073.1.S1_at5/1111+18627166..18628828hypothetical protein
LOC_Os11g32400OsAffx.31268.1.S1_at11/1111+18631460..18631768hypothetical protein
LOC_Os11g32410OsAffx.19120.1.S1_x_at11/1111+18632581..18635944expressed protein
LOC_Os11g32410Os.53128.1.S1_at11/1111+18632581..18635944expressed protein
LOC_Os11g32420Os.14919.1.S1_at7/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420Os.56216.1.S1_at2/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420OsAffx.29313.1.S1_at1/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein
LOC_Os11g32440OsAffx.19121.1.S1_at11/1111+18651732..18652366hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54073.1.S1_at--1140--10711Chr11:18628211..18628235 (25 bp)
TTGCTTCTACTATCTGTTCCCAGAA
LOC_Os11g32390
Os.54073.1.S1_at--161--6691Chr11:18628196..18628220 (25 bp)
GTTCCCAGAATGCATCGTACCGTAA
LOC_Os11g32390
Os.54073.1.S1_at--1136--611Chr11:18628159..18628183 (25 bp)
ATGCTCCATTGTTTGTACGCTCTCA
LOC_Os11g32390
Os.54073.1.S1_at--1042--3451Chr11:18628084..18628108 (25 bp)
CAGTGTACACTCAAGAACCCTCAAG
LOC_Os11g32390
Os.54073.1.S1_at--136--2731Chr11:18627195..18627219 (25 bp)
AAGCAGCTTGGCGAGCCTCTTGAAT
LOC_Os11g32390
Os.54073.1.S1_at--97--4191Chr11:18627166..18627190 (25 bp)
CCCTTTATATCCTGCTTCCAAGTAA
NONE
Os.54073.1.S1_at--627--7951Chr11:18627121..18627141 (21 bp)
GGATCACTAAGCCATAGCCATCTAC
NONE
Os.54073.1.S1_at--658--10871Chr11:18626855..18626879 (25 bp)
TTGGCCTCGCTTCAACAATCAAGTA
NONE
Os.54073.1.S1_at--304--10231Chr11:18626817..18626841 (25 bp)
TATTGGCTTCACACGATAGGCGCTT
NONE
Os.54073.1.S1_at--1046--2891Chr11:18626730..18626754 (25 bp)
AAGGTTTCCCTGTATCTGTTTCATG
NONE
Os.54073.1.S1_at--279--10411Chr11:18626696..18626720 (25 bp)
TTATTCCGTGGCTAATTCTGTATCC
NONE
Target Sequence 
TTGCTTCTACTATCTGTTCCCAGAATGCATCGTACCGTAATATTAGTAAAACATGCTCCATTGTTTGTACGCTCTCATCT
TGGCCTGTGCAGGACATACTTCATTGTATACACACTCTCAGAGTCTTCAGTGTACACTCAAGAACCCTCAAGGCAGATTA
TGTGCCTAATGCACCAGATTACATTTTTACTACATGGTTTTTACTTGCTGAGAGTGAAGCAGCTTGGCGAGCCTCTTGAA
TTCCTCCCTTTATATCCTGCTTCCAAGTAAAGACTATTAAATTCTTCAATCGTTGGATCACTAAGCCATAGCCATCTACT
ATTGGCCTCGCTTCAACAATCAAGTATCAAGATGCTATGTATTGGCTTCACACGATAGGCGCTTCAACAATCAATACTGT
CATTCTAAGACCAGGTTGTAAACATGTAATGTGCATGCAAGAAAAGAAGGTTTCCCTGTATCTGTTTCATGGTTTTATTT
TTATTCCGTGGCTAATTCTGTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis