Browse Element(s) Details


OsAffx.7274.1.S1_at

Description tigr:9639.m02939
TID=OsAffx.7274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g323508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein
LOC_Os11g32380OsAffx.7275.1.S1_at11/1111+18625705..18626385hypothetical protein
LOC_Os11g32390Os.54073.1.S1_at5/1111+18627166..18628828hypothetical protein
LOC_Os11g32400OsAffx.31268.1.S1_at11/1111+18631460..18631768hypothetical protein
LOC_Os11g32410OsAffx.19120.1.S1_x_at11/1111+18632581..18635944expressed protein
LOC_Os11g32410Os.53128.1.S1_at11/1111+18632581..18635944expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7274.1.S1_at--398--6031Chr11:18606759..18606783 (25 bp)
GAGATGAGACAGAAGCAGCGTGATT
LOC_Os11g32350
OsAffx.7274.1.S1_at--301--4671NONE
GCGGACCTGGTCGTCGGTGACCCTA
NONE
OsAffx.7274.1.S1_at--253--7371Chr11:18606850..18606871 (22 bp)
GTGACCCTAGCCTGTGGTGGGCTTT
LOC_Os11g32350
OsAffx.7274.1.S1_at--1134--7231Chr11:18606900..18606924 (25 bp)
GTCCTCCTAGGCCAAAATCCAGGGT
LOC_Os11g32350
OsAffx.7274.1.S1_at--1062--8071Chr11:18606932..18606956 (25 bp)
GGACCACCTGGACTACCCACTGGAG
LOC_Os11g32350
OsAffx.7274.1.S1_at--1096--3511Chr11:18606962..18606986 (25 bp)
CATGCCGGTGGAGAGCACCGTCCTT
LOC_Os11g32350
OsAffx.7274.1.S1_at--144--4211Chr11:18606991..18607015 (25 bp)
CCCCGGCGAACAGCAAGAGGCAAGA
LOC_Os11g32350
OsAffx.7274.1.S1_at--240--1331Chr11:18607006..18607030 (25 bp)
AGAGGCAAGATCCTATCGGTCGCAG
LOC_Os11g32350
OsAffx.7274.1.S1_at--189--10151NONE
TATCGGTCGCAGAGCCCGGATAAAA
NONE
OsAffx.7274.1.S1_at--539--4431NONE
GCCATCGATGCATCCCAAACAAGAT
NONE
OsAffx.7274.1.S1_at--1003--8591Chr11:18608548..18608572 (25 bp)
TGGTCGGGTGGAGCTTCATCAAGAT
LOC_Os11g32350
Target Sequence 
GAGATGAGACAGAAGCAGCGTGATTTGGGGGAGGATTGGAGTGGCGGGCACGCCTGCGCGGTGCGCCTCTCCGCGGACCT
GGTCGTCGGTGACCCTAGCCTGTGGTGGGCTTTTTCTGGTTTGGGCCGTCGGGGGGAGGGGGTCCTCCTAGGCCAAAATC
CAGGGTGGTCCAGGGACCACCTGGACTACCCACTGGAGCCGCCCATGCCGGTGGAGAGCACCGTCCTTGGCGCCCCGGCG
AACAGCAAGAGGCAAGATCCTATCGGTCGCAGAGCCCGGATAAAAAAACTCAAGACAATCACCACACCTACCTGCGGCCA
TCGATGCATCCCAAACAAGATTGTTTTAAAGATAATTTTAAAAGGAATGAAATTGATTGGCATTGAAATTAGGAGTAGGG
TGGTCGGGTGGAGCTTCATCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis