Browse Element(s) Details


OsAffx.5045.1.S1_at

Description tigr:9634.m03665
TID=OsAffx.5045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3844011/11hypothetical protein
LOC_Os11g323001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38410NANA6+22754312..22757233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38420Os.10703.2.S1_x_at1/116+22757549..22763659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38430Os.51681.1.S1_x_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51681.1.S1_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51797.1.S1_x_at1/116+22765884..22766567expressed protein
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5045.1.S1_at--55--8151Chr06:22776343..22776364 (22 bp)
GGACAGACCTACGAGGGAGGCCAAT
LOC_Os06g38440
OsAffx.5045.1.S1_at--891--2091Chr06:22776341..22776364 (24 bp)
ACAGACCTACGAGGGAGGCCAATGG
LOC_Os06g38440
OsAffx.5045.1.S1_at--330--8451Chr06:22776325..22776349 (25 bp)
GGCCAATGGTGGTAGATCCACCCCT
LOC_Os06g38440
OsAffx.5045.1.S1_at--1131--2931Chr06:22776321..22776345 (25 bp)
AATGGTGGTAGATCCACCCCTCGTG
LOC_Os06g38440
OsAffx.5045.1.S1_at--832--8611Chr06:22776319..22776343 (25 bp)
TGGTGGTAGATCCACCCCTCGTGAG
LOC_Os06g38440
OsAffx.5045.1.S1_at--1000--7232Chr11:18584921..18585328 (25 bp)
GTCGCCCCCAGATCCGTGAGGGAGA
LOC_Os11g32300
OsAffx.5045.1.S1_at--644--8891Chr06:22776275..22776299 (25 bp)
TGAGGGAGAAGGCCGGCAGCGCCAG
LOC_Os06g38440
OsAffx.5045.1.S1_at--507--8251Chr06:22776261..22776285 (25 bp)
GGCAGCGCCAGATCCGTGAGGAAGA
LOC_Os06g38440
OsAffx.5045.1.S1_at--542--4772Chr09:13770690..13770728 (24 bp)
GCTGCCGCCGAATCCACAAGGGAGA
NONE
OsAffx.5045.1.S1_at--796--9171Chr06:22776229..22776253 (25 bp)
TGCCGCCGAATCCACAAGGGAGAAG
LOC_Os06g38440
OsAffx.5045.1.S1_at--654--4151Chr06:22776226..22776250 (25 bp)
CGCCGAATCCACAAGGGAGAAGGCC
LOC_Os06g38440
Target Sequence 
GGACAGACCTACGAGGGAGGCCAATGGTGGTAGATCCACCCCTCGTGAGGCTGTCGCCCCCAGATCCGTGAGGGAGAAGG
CCGGCAGCGCCAGATCCGTGAGGAAGAAGGCCGCTGCCGCCGAATCCACAAGGGAGAAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis