Browse Element(s) Details


Os.28463.1.S1_x_at

Description gb:AF332875.1
DB_XREF= gi:12698879
TID=Os.28463.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28463 (NCBI UniGene Cluster)
DEF=Oryza sativa histone deacetylase HD1 mRNA, complete cds.
PROD=histone deacetylase HD1
FL= gb:AF332875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g384701/11histone deacetylase, putative, expressed
LOC_Os02g123501/11histone deacetylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28463.1.S1_x_at--858--1231Chr06:22797575..22797598 (24 bp)
AGTTGCACTTGGTCATGAGCTCACC
LOC_Os06g38470
Os.28463.1.S1_x_at--749--9671NONE
TCACCGACAAGATGCCTCCAAATGA
NONE
Os.28463.1.S1_x_at--1160--5971NONE
GAGAAATCACTGAATCAGAGGCCAA
NONE
Os.28463.1.S1_x_at--910--9671NONE
TCACTGAATCAGAGGCCAAAGATCA
NONE
Os.28463.1.S1_x_at--772--2711Chr02:6425189..6425213 (25 bp)
AAGCAAGCTCCTGTAAGTCGTCGTC
LOC_Os02g12350
Os.28463.1.S1_x_at--167--291NONE
ATAGCAAAAGCTCTGCATTGCCCAA
NONE
Os.28463.1.S1_x_at--979--5131NONE
GCAAAAGCTCTGCATTGCCCAATGC
NONE
Os.28463.1.S1_x_at--634--2691NONE
AAGCTCTGCATTGCCCAATGCCTAT
NONE
Os.28463.1.S1_x_at--278--7931NONE
GGATATCGAATTATAGAACACCATG
NONE
Os.28463.1.S1_x_at--360--10131NONE
TATCGAATTATAGAACACCATGGTT
NONE
Os.28463.1.S1_x_at--988--5151NONE
GAATTATAGAACACCATGGTTAATC
NONE
Target Sequence 
AGTTGCACTTGGTCATGAGCTCACCGACAAGATGCCTCCAAATGAGTATTTTGAGTATTTTGGTCCAGAATACAGTCTTT
TCGTTGCAGCAAGTAACATGGAGAACAGAAATACCAACAAGCAATTGGAGGAAATAAAATGCAACATTCTGGACAATCTT
TCAAAACTTCAACATGCTCCTAGTGTCCAATTTGAAGAGCGAATTCCTGAAACAAAGTTACCTGAGCCAGATGAAGATCA
AGAGGATCCAGATGAAAGGCACGACCCTGACTCTGATATGGTATTGGATGATCACAAACCTATGGGACACTCAGCAAGAA
GCCTTATTCGCAACATCGAAGTTAAGAGAGAAATCACTGAATCAGAGGCCAAAGATCAGCATGGTAAGAGATTGACAACT
GAACATAAAGGACCAGAACCGATGGCAGACGATCCTGGTTCCTCCAAGCAAGCTCCTGTAAGTCGTCGTCTTCTCTATCC
ATCTGCAAATCCATAGCAAAAGCTCTGCATTGCCCAATGCCTATATGGATATCGAATTATAGAACACCATGGTTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28463.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis