Browse Element(s) Details

Os.18224.1.S1_at

Description

gb:AK072583.1
DB_XREF= gi:32982606
TID=Os.18224.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132G06, full insert sequence.
FL= gb:AK072583.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38510	11/11	Pectate lyase precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38470	Os.10708.2.S1_at	11/11	6	+	22793362..22799199	histone deacetylase, putative, expressed
LOC_Os06g38470	Os.10708.1.S1_a_at	11/11	6	+	22793362..22799199	histone deacetylase, putative, expressed
LOC_Os06g38470	Os.10708.1.S1_at	11/11	6	+	22793362..22799199	histone deacetylase, putative, expressed
LOC_Os06g38470	Os.28463.1.S1_x_at	1/11	6	+	22793362..22799199	histone deacetylase, putative, expressed
LOC_Os06g38480	Os.54381.1.S1_at	11/11	6	+	22806541..22808931	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490	OsAffx.15822.1.S1_at	11/11	6	+	22808654..22812272	Leucine Rich Repeat family protein
LOC_Os06g38490	Os.54901.1.S1_at	1/11	6	+	22808654..22812272	Leucine Rich Repeat family protein
LOC_Os06g38500	NA	NA	6	+	22816834..22817166	hypothetical protein
LOC_Os06g38510	Os.18224.1.S1_at	11/11	6	+	22820120..22822391	Pectate lyase precursor, putative, expressed
LOC_Os06g38520	OsAffx.27990.1.S1_at	11/11	6	+	22823679..22825322	Pectate lyase family protein
LOC_Os06g38529	NA	NA	6	+	22828842..22829431	NA
LOC_Os06g38540	Os.20602.2.S1_x_at	10/11	6	+	22832940..22835114	hAT family dimerisation domain containing protein
LOC_Os06g38550	Os.19238.2.S1_x_at	11/11	6	+	22835897..22838543	expressed protein
LOC_Os06g38550	Os.19238.1.S1_a_at	11/11	6	+	22835897..22838543	expressed protein
LOC_Os06g38550	Os.19238.1.S1_at	10/11	6	+	22835897..22838543	expressed protein
LOC_Os06g38564	NA	NA	6	+	22839364..22840687	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009664	biological_process	cell wall organization and biogenesis (sensu Magnoliophyta)
GO:0016829	molecular_function	lyase activity
GO:0030570	molecular_function	pectate lyase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18224.1.S1_at--507--463	1	Chr06:22822061..22822085 (25 bp)	GCGATGCAAATTTAGAGGGCGATAG	LOC_Os06g38510
Os.18224.1.S1_at--157--407	2	Chr06:22822088..22822112 (25 bp)	CGAGGAGCATGCATGTTTGTGCGTA	LOC_Os06g38510
Os.18224.1.S1_at--1074--499	2	Chr06:22825517..22825541 (25 bp)	GCATGTTTGTGCGTATAGGTCTACT	NONE
Os.18224.1.S1_at--86--29	1	Chr06:22822112..22822136 (25 bp)	ATAGGTCTACTTGTTGATGGTGATC	LOC_Os06g38510
Os.18224.1.S1_at--936--775	1	Chr06:22822130..22822154 (25 bp)	GGTGATCACGAAAGAGCCAATGCAT	LOC_Os06g38510
Os.18224.1.S1_at--634--439	2	Chr06:22822145..22822169 (25 bp)	GCCAATGCATTGTCATGATAGAGGA	LOC_Os06g38510
Os.18224.1.S1_at--891--457	1	Chr06:22822173..22822197 (25 bp)	GCGCATTTATGCAGAAGGCCCTAGG	LOC_Os06g38510
Os.18224.1.S1_at--689--5	1	Chr06:22822252..22822276 (25 bp)	ATTGTTGTTTCATTAACTGCACGCA	LOC_Os06g38510
Os.18224.1.S1_at--944--197	1	Chr06:22822267..22822291 (25 bp)	ACTGCACGCATCTCCAATGCAAAGT	LOC_Os06g38510
Os.18224.1.S1_at--391--735	1	Chr06:22822330..22822354 (25 bp)	GTGCAATGAAGCATCTCACTACTAT	LOC_Os06g38510
Os.18224.1.S1_at--466--63	1	Chr06:22822360..22822384 (25 bp)	ATGACTTCAGTGTCGGGTCGTAACC	LOC_Os06g38510

Target Sequence

GCGATGCAAATTTAGAGGGCGATAGGGCGAGGAGCATGCATGTTTGTGCGTATAGGTCTACTTGTTGATGGTGATCACGA
AAGAGCCAATGCATTGTCATGATAGAGGACANTGCGCATTTATGCAGAAGGCCCTAGGGCAGGAATTATTTTTTTTTCAN
TNGATTGTTTTAAATGTATTGTACTGAAACTACATTGTTGTTTCATTAACTGCACGCATCTCCAATGCAAAGTGCTAATG
TAAGGTGTTTAATATATAGTGCTAATGTAAAGTGCAATGAAGCATCTCACTACTATAGAAGATGACTTCAGTGTCGGGTC
GTAACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis