Browse Element(s) Details


Os.19238.2.S1_x_at

Description gb:AK106549.1
DB_XREF= gi:32991758
TID=Os.19238.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F11, full insert sequence.
FL= gb:AK106549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3855011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein
LOC_Os06g38529NANA6+22828842..22829431NA
LOC_Os06g38540Os.20602.2.S1_x_at10/116+22832940..22835114hAT family dimerisation domain containing protein
LOC_Os06g38550Os.19238.2.S1_x_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_a_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_at10/116+22835897..22838543expressed protein
LOC_Os06g38564NANA6+22839364..22840687hypothetical protein
LOC_Os06g38580NANA6+22855418..22855618hypothetical protein
LOC_Os06g38590OsAffx.5047.1.S1_at10/116+22862201..22865641Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19238.2.S1_x_at--87--1171Chr06:22837493..22837517 (25 bp)
AGTCATGGAGCCCTGAGCACAATGC
LOC_Os06g38550
Os.19238.2.S1_x_at--598--1491Chr06:22837508..22837532 (25 bp)
AGCACAATGCTACCGTCGTTGACTA
LOC_Os06g38550
Os.19238.2.S1_x_at--352--5711Chr06:22837528..22837552 (25 bp)
GACTACACTTGGAGCACTGGACATA
LOC_Os06g38550
Os.19238.2.S1_x_at--366--5851Chr06:22837575..22837599 (25 bp)
GACCAAATCGCTTTCTTTTGTGCAG
LOC_Os06g38550
Os.19238.2.S1_x_at--199--6331Chr06:22837603..22837627 (25 bp)
GATGCAGCCCGTAGGAATGTTCTTC
LOC_Os06g38550
Os.19238.2.S1_x_at--170--8211Chr06:22837616..22837640 (25 bp)
GGAATGTTCTTCTAACCACTCTGAA
LOC_Os06g38550
Os.19238.2.S1_x_at--854--1271Chr06:22837833..22837857 (25 bp)
AGATCATGATCTGTTTGCCGTCCAC
LOC_Os06g38550
Os.19238.2.S1_x_at--107--2191Chr06:22837856..22837880 (25 bp)
ACACTTTGGTGTATCAGGCGTCTCA
LOC_Os06g38550
Os.19238.2.S1_x_at--68--931Chr06:22837889..22837913 (25 bp)
AGGCTTCTCTGGTTTGCTTCAAAGA
LOC_Os06g38550
Os.19238.2.S1_x_at--636--191Chr06:22837920..22837944 (25 bp)
ATTTCCCTGGTTGTCAGTTTCCATG
LOC_Os06g38550
Os.19238.2.S1_x_at--97--10771Chr06:22838022..22838046 (25 bp)
TTGACTGCACTTCAGTTCACGGATA
LOC_Os06g38550
Target Sequence 
AGTCATGGAGCCCTGAGCACAATGCTACCGTCGTTGACTACACTTGGAGCACTGGACATACACCATTTGGCCCATTCTCA
GAGACCAAATCGCTTTCTTTTGTGCAGAAAGATGCAGCCCGTAGGAATGTTCTTCTAACCACTCTGAACTACACAATCAC
AAGCGCTATTGATGTTTTGGAGTCAATGGCTGCGCATGGTGGAGAGAGTATACTCCTTAGAAGGAAAAGGCGTGTTGAAT
TCATTCAAAGATGGAATCTGCTCACTTATAAACTGGAGAAGGTGGTCTCAGCCATGTCCCGCCTCGACTACAATAAAGCG
ATGTACTTTCTGAGATCGTCAGATCATGATCTGTTTGCCGTCCACACTTTGGTGTATCAGGCGTCTCAGGAGTTGGAGGC
TTCTCTGGTTTGCTTCAAAGATCCACCATTTCCCTGGTTGTCAGTTTCCATGTCTGGAATTTTCGTTTTTGGTTTCTTTT
ATGTTTACTCGAAGAGAGATAAATTGTTCAGGAGCAAAAGGAAACAGTTTTGACTGCACTTCAGTTCACGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19238.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis