Browse Element(s) Details


OsAffx.5047.1.S1_at

Description tigr:9634.m03679
TID=OsAffx.5047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3859010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38550Os.19238.2.S1_x_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_a_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_at10/116+22835897..22838543expressed protein
LOC_Os06g38564NANA6+22839364..22840687hypothetical protein
LOC_Os06g38580NANA6+22855418..22855618hypothetical protein
LOC_Os06g38590OsAffx.5047.1.S1_at10/116+22862201..22865641Leucine Rich Repeat family protein
LOC_Os06g38594NANA6+22866152..22866457hypothetical protein
LOC_Os06g38600OsAffx.27991.1.S1_at11/116+22869735..22870189hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5047.1.S1_at--129--6131Chr06:22864736..22864760 (25 bp)
GAGTGTGAAGCCCTACGAAATGTTC
LOC_Os06g38590
OsAffx.5047.1.S1_at--1107--4511Chr06:22864745..22864769 (25 bp)
GCCCTACGAAATGTTCGCCATCGAA
LOC_Os06g38590
OsAffx.5047.1.S1_at--458--9831Chr06:22864776..22864800 (25 bp)
TAAAAATCATCACTTCATGCTCTTC
LOC_Os06g38590
OsAffx.5047.1.S1_at--595--7591Chr06:22864815..22864839 (25 bp)
GGGCAGACTTTAAGGCCTTAGTATT
LOC_Os06g38590
OsAffx.5047.1.S1_at--1146--8171Chr06:22864905..22864929 (25 bp)
GGAATGCCCTAACTTTTAGCCAAAG
LOC_Os06g38590
OsAffx.5047.1.S1_at--954--1151Chr06:22864939..22864963 (25 bp)
AGTCTTGGAGGTAGCATTTGCTCTG
LOC_Os06g38590
OsAffx.5047.1.S1_at--873--2631Chr06:22864976..22865000 (25 bp)
AACCATTGTGTACCTCCACTAATAC
LOC_Os06g38590
OsAffx.5047.1.S1_at--938--10091Chr06:22865051..22865075 (25 bp)
TATGTCAGTGACTTCGGTTCAGCAA
LOC_Os06g38590
OsAffx.5047.1.S1_at--764--7891Chr06:22865066..22865090 (25 bp)
GGTTCAGCAAGATTTCTATGCCCAA
LOC_Os06g38590
OsAffx.5047.1.S1_at--402--6111Chr06:22865110..22865134 (25 bp)
GAGTGTAACAAGTTTGGGTTGCCTT
LOC_Os06g38590
OsAffx.5047.1.S1_at--98--8171Chr06:22866049..22866073 (25 bp)
GGAACATTCCTACAACCACGGTTAG
NONE
Target Sequence 
GAGTGTGAAGCCCTACGAAATGTTCGCCATCGAAATATCATAAAAATCATCACTTCATGCTCTTCAGTGGATTCTGAAGG
GGCAGACTTTAAGGCCTTAGTATTTGAATACATGAAGAATGGGAACCTAGAGATGTGGTTACATCCAAAGAAACATGAGC
ATAGTCAAAGGAATGCCCTAACTTTTAGCCAAAGAGTCAATATAGTCTTGGAGGTAGCATTTGCTCTGGATTATCTTCAC
AACCATTGTGTACCTCCACTAATACATTGTGACTTGAAGCCAAGCAATATTCTTTTGGATCTTGACATGGTTGCATATGT
CAGTGACTTCGGTTCAGCAAGATTTCTATGCCCAAAATCAAACTTGGATCAAGAGAGTGTAACAAGTTTGGGTTGCCTTA
AAGGAACAGTTGGATACATCCCACCAGAATATGGCATGAGCAAAGAAATATCAACAAAGGCCGATGTTTATAGTTTTGGA
GTGATTCTATTAGAAATGATAACAGTTATTCCAAGTAGGAACATTCCTACAACCACGGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis