Browse Element(s) Details


OsAffx.27991.1.S1_at

Description tigr:9634.m03680
TID=OsAffx.27991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3860011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38580NANA6+22855418..22855618hypothetical protein
LOC_Os06g38590OsAffx.5047.1.S1_at10/116+22862201..22865641Leucine Rich Repeat family protein
LOC_Os06g38594NANA6+22866152..22866457hypothetical protein
LOC_Os06g38600OsAffx.27991.1.S1_at11/116+22869735..22870189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27991.1.S1_at--141--1151Chr06:22870112..22870136 (25 bp)
AGTCGTCCCGCTGTATGATAGGCTC
LOC_Os06g38600
OsAffx.27991.1.S1_at--20--6931Chr06:22870100..22870124 (25 bp)
GTATGATAGGCTCCGCGATCGCGAC
LOC_Os06g38600
OsAffx.27991.1.S1_at--966--5191Chr06:22870007..22870031 (25 bp)
GAATTACACAAACCATGCCAATCCC
LOC_Os06g38600
OsAffx.27991.1.S1_at--444--7231Chr06:22869976..22870000 (25 bp)
GTCCCACACCAACCGTTGATTATTA
LOC_Os06g38600
OsAffx.27991.1.S1_at--823--911Chr06:22869952..22869976 (25 bp)
AGGCTTTCAGACGAAGCTGCTTCTC
LOC_Os06g38600
OsAffx.27991.1.S1_at--406--4911Chr06:22869934..22869958 (25 bp)
GCTTCTCCAAACCATGCCGATTATC
LOC_Os06g38600
OsAffx.27991.1.S1_at--168--551Chr06:22869912..22869936 (25 bp)
ATCCCACACCAATCATAATCATACT
LOC_Os06g38600
OsAffx.27991.1.S1_at--480--3071Chr06:22869896..22869920 (25 bp)
AATCATACTGGCTTCTGCAGTGCAT
LOC_Os06g38600
OsAffx.27991.1.S1_at--1028--10591Chr06:22869884..22869908 (25 bp)
TTCTGCAGTGCATCCCAATACGGGA
LOC_Os06g38600
OsAffx.27991.1.S1_at--920--1431Chr06:22869836..22869860 (25 bp)
AGAACCAGACGAACGATACCCTCAA
LOC_Os06g38600
OsAffx.27991.1.S1_at--319--1751Chr06:22869812..22869836 (25 bp)
ACCTCAAGGCATAGGCTACTCTGCT
LOC_Os06g38600
Target Sequence 
AGTCGTCCCGCTGTATGATAGGCTCCGCGATCGCGACCTCTTTCGTCCGTCGACGACCACTCCGGTCGCTGCCGCCGGAG
ATGCCAACCAAGCGGCGGAGACGAGGAATTACACAAACCATGCCAATCCCACATCAGTCCCACACCAACCGTTGATTATT
AGGCTTTCAGACGAAGCTGCTTCTCCAAACCATGCCGATTATCCCACACCAATCATAATCATACTGGCTTCTGCAGTGCA
TCCCAATACGGGACCAAAACCAGAACAACCACCACAAGAACCAGACGAACGATACCCTCAACCTCAAGGCATAGGCTACT
CTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis