Browse Element(s) Details


Os.19238.1.S1_at

Description gb:AK068592.1
DB_XREF= gi:32978609
TID=Os.19238.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154A14, full insert sequence.
FL= gb:AK073844.1 gb:AK068592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3855010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein
LOC_Os06g38529NANA6+22828842..22829431NA
LOC_Os06g38540Os.20602.2.S1_x_at10/116+22832940..22835114hAT family dimerisation domain containing protein
LOC_Os06g38550Os.19238.2.S1_x_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_a_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_at10/116+22835897..22838543expressed protein
LOC_Os06g38564NANA6+22839364..22840687hypothetical protein
LOC_Os06g38580NANA6+22855418..22855618hypothetical protein
LOC_Os06g38590OsAffx.5047.1.S1_at10/116+22862201..22865641Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19238.1.S1_at--83--7951Chr06:22838042..22838066 (25 bp)
GGATACTGTTTGAATGCTCATCTTG
LOC_Os06g38550
Os.19238.1.S1_at--245--4831Chr06:22838057..22838081 (25 bp)
GCTCATCTTGATACCATAGTCAGGA
LOC_Os06g38550
Os.19238.1.S1_at--172--9871Chr06:22838108..22838132 (25 bp)
TACATGGAGATGTCACTGGATGCAT
LOC_Os06g38550
Os.19238.1.S1_at--228--2571Chr06:22838135..22838159 (25 bp)
AACGGGTGCATCTTGTTTTAAACAG
LOC_Os06g38550
Os.19238.1.S1_at--640--5371Chr06:22838198..22838222 (25 bp)
GAAGCACTACTTCCACTAGTTTTGT
LOC_Os06g38550
Os.19238.1.S1_at--651--10051Chr06:22838214..22838238 (25 bp)
TAGTTTTGTAAGTTGCATGTGCCCA
LOC_Os06g38550
Os.19238.1.S1_at--983--771Chr06:22838230..22838254 (25 bp)
ATGTGCCCAATTCACTCGGTACATA
LOC_Os06g38550
Os.19238.1.S1_at--598--10471Chr06:22838312..22838336 (25 bp)
TTACTGTCATACTTGCTGGGTGCAT
LOC_Os06g38550
Os.19238.1.S1_at--880--2631Chr06:22838337..22838361 (25 bp)
AACCTATGTGGGATGCTGTGCTCAA
LOC_Os06g38550
Os.19238.1.S1_at--66--10452Chr06:22841014..22841038 (25 bp)
TTAGTCCAGTTCCTTTGTAGCACTC
NONE
Os.19238.1.S1_at--455--10371NONE
TTTTTTATCTGCTTGTTATTCTCCC
NONE
Target Sequence 
GGATACTGTTTGAATGCTCATCTTGATACCATAGTCAGGATTCAGAAAAGTTGCATCCTTGCATAATACATGGAGATGTC
ACTGGATGCATGAAACGGGTGCATCTTGTTTTAAACAGATGAATTCACTTGTACGAGATATACTGGATTTCCTTAGGAAG
CACTACTTCCACTAGTTTTGTAAGTTGCATGTGCCCAATTCACTCGGTACATACTGTTGATCTAGATTCTGGAGACATGC
ATATATGTTTTCTATTCTTGACTAGCTTAATTACTGTCATACTTGCTGGGTGCATAACCTATGTGGGATGCTGTGCTCAA
TTGATCATGTGTAATTTCGAGATGTCAATTTTTCTAAACAATGCCTTTGCAGGATATTTTAAGCTGATTCTTTAAGAACT
ATGATTGTGGCTTATATTCGCAAAGTTGGTTGTAAGTCAATAGGGTTTTTAGTCCAGTTCCTTTGTAGCACTCTTTGTTT
TTTATCTGCTTGTTATTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis