Browse Element(s) Details


Os.54901.1.S1_at

Description gb:AK107057.1
DB_XREF= gi:32992266
TID=Os.54901.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D09, full insert sequence.
FL= gb:AK107057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g027601/11hypothetical protein
LOC_Os06g384901/11Leucine Rich Repeat family protein
LOC_Os06g256901/11hypothetical protein
LOC_Os11g028801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02730Os.51195.1.S1_at11/116+977317..978766nucleoid DNA-binding protein cnd41, putative, expressed
LOC_Os06g02740NANA6+989762..992282Zinc knuckle family protein
LOC_Os06g02750Os.55711.1.S1_at1/116+997123..1001420retrotransposon protein, putative, unclassified
LOC_Os06g02760OsAffx.27427.1.S1_at9/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.32596.1.S1_x_at6/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_x_at3/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_at2/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.54901.1.S1_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02760OsAffx.30177.1.S1_x_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02770Os.53313.1.S1_at9/116+1008684..1010304expressed protein
LOC_Os06g02780Os.9382.1.S1_at11/116+1010587..1013689Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02790OsAffx.30284.1.S1_at11/116+1015825..1018105hypothetical protein
LOC_Os06g02790OsAffx.10809.1.S1_at1/116+1015825..1018105hypothetical protein
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54901.1.S1_at--1026--391NONE
ATCAGCAACAGGAGACCCAGCACAT
NONE
Os.54901.1.S1_at--808--5812Chr11:981873..981892 (20 bp)
GACCCAGCACATGGCAGATTTGTTG
LOC_Os11g02880
Os.54901.1.S1_at--598--10251Chr02:19035790..19035814 (25 bp)
TTTGTTGGAAAGAGCCCTGGTGGCA
NONE
Os.54901.1.S1_at--117--1671Chr02:19035802..19035826 (25 bp)
AGCCCTGGTGGCAAGTGCAGTAGCA
NONE
Os.54901.1.S1_at--185--4051Chr02:19036103..19036127 (25 bp)
CGATGGGAATCGCAAGAGCAACCTT
NONE
Os.54901.1.S1_at--418--10712Chr02:19036126..19036150 (25 bp)
TTGCTCTGATACCATGTGACTTGTG
NONE
Os.54901.1.S1_at--910--3491Chr02:19036138..19036162 (25 bp)
CATGTGACTTGTGCTGAATCAGTAC
NONE
Os.54901.1.S1_at--397--3453Chr06:22808928..22808958 (25 bp)
CAGTACGGTGTATTCCAGGATAGCA
LOC_Os06g38490
Os.54901.1.S1_at--958--2151Chr02:19036191..19036215 (25 bp)
ACAGCGGTGTATGGGCCTCATGAGC
NONE
Os.54901.1.S1_at--1047--3691Chr02:19036257..19036281 (25 bp)
CTAACAACCACCACTTCCAATTAAG
NONE
Os.54901.1.S1_at--443--5211Chr02:19036294..19036318 (25 bp)
GAATTTTCTTTCACATCGGTAGCAA
NONE
Target Sequence 
ATCAGCAACAGGAGACCCAGCACATGGCAGATTTGTTGGAAAGAGCCCTGGTGGCAAGTGCAGTAGCAAAGGATGGAGGA
TGCGGGTCCTGCAGGCTGCAACTAGCCAACACCACTGCAGCTAGTGCAGTTGGATAATGCAAACCTCAAGCAGGAGAAAA
GGCAGTCAAGCAGATCCAGCAGGAGAAAAAGATGCTCCGGCCAGAAGAAGAGAGGATCAATCCCAAAAATCAAGTGACCA
CGAAAAAACAGAACACACAGCAGAAAACTTCCATTGGGAGAAGAGAGGAGGGAGGACACTCGCCGGAGACCAAGGCCGAT
GAAGAGCTCGCTGGCGGCGGACATCGATGGGAATCGCAAGAGCAACCTTGCTCTGATACCATGTGACTTGTGCTGAATCA
GTACGGTGTATTCCAGGATAGCAATAGTATATACAGCGGTGTATGGGCCTCATGAGCCAATAGTAAATAAGTCTAAGGCT
ACATTGATATACACATATCTAACAACCACCACTTCCAATTAAGTGGTGAACTAATGAATTTTCTTTCACATCGGTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis