Browse Element(s) Details


Os.9382.1.S1_at

Description gb:AK120738.1
DB_XREF= gi:37990361
TID=Os.9382.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003I22, full insert sequence.
FL= gb:AK120738.1 gb:AK068441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0278011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02740NANA6+989762..992282Zinc knuckle family protein
LOC_Os06g02750Os.55711.1.S1_at1/116+997123..1001420retrotransposon protein, putative, unclassified
LOC_Os06g02760OsAffx.27427.1.S1_at9/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.32596.1.S1_x_at6/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_x_at3/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_at2/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.54901.1.S1_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02760OsAffx.30177.1.S1_x_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02770Os.53313.1.S1_at9/116+1008684..1010304expressed protein
LOC_Os06g02780Os.9382.1.S1_at11/116+1010587..1013689Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02790OsAffx.30284.1.S1_at11/116+1015825..1018105hypothetical protein
LOC_Os06g02790OsAffx.10809.1.S1_at1/116+1015825..1018105hypothetical protein
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9382.1.S1_at--426--4071Chr06:1011076..1011100 (25 bp)
CGAGGATCACGCTTGTGTTCGACAA
LOC_Os06g02780
Os.9382.1.S1_at--366--9371Chr06:1010853..1010877 (25 bp)
TCGATCGGGACTCTACTACTACAGG
LOC_Os06g02780
Os.9382.1.S1_at--262--9571Chr06:1010818..1010842 (25 bp)
TCTTGCTCCGGTGATACCTTTTAAT
LOC_Os06g02780
Os.9382.1.S1_at--358--10371Chr06:1010794..1010818 (25 bp)
TTTTCATAAAGCTCGAGCGCTCGCG
LOC_Os06g02780
Os.9382.1.S1_at--747--1651Chr06:1010779..1010803 (25 bp)
AGCGCTCGCGTCTTTAATTTGATTC
LOC_Os06g02780
Os.9382.1.S1_at--1106--6571Chr06:1010759..1010783 (25 bp)
GATTCCTCCTATTTATTTTTGCGTA
LOC_Os06g02780
Os.9382.1.S1_at--893--10391Chr06:1010743..1010767 (25 bp)
TTTTGCGTATGCGTACACGTGCTAC
LOC_Os06g02780
Os.9382.1.S1_at--621--2171Chr06:1010729..1010753 (25 bp)
ACACGTGCTACAAGATCAGCTGGCT
LOC_Os06g02780
Os.9382.1.S1_at--50--10131Chr06:1010695..1010719 (25 bp)
TATGAGCCAGATTAGCGGTTGCTTT
LOC_Os06g02780
Os.9382.1.S1_at--587--7911Chr06:1010679..1010703 (25 bp)
GGTTGCTTTGATATGTACTCTTCCA
LOC_Os06g02780
Os.9382.1.S1_at--396--7011Chr06:1010665..1010689 (25 bp)
GTACTCTTCCATCCATGTGGGTATA
LOC_Os06g02780
Target Sequence 
CGAGGATCACGCTTGTGTTCGACAAGAACGCCGCCGTCGAGCTCGANCCGTCGGGCGTCCTCTTCCAGGGNTGCCTCGCC
TTCACCGCCGGCCCCAACGACCAGGTCCCCGGGATCATCGGCAACATCCANCTTCAGACGCTCGAGGTGCTCTACAACAT
CCCCGCCGCCCTCGTCGGATTCCGCCATGCCGCCTGCTGAGTCCGGCCGCCGCCCCCGACGTCTCGATCGGGACTCTACT
ACTACAGGCCGGAGCTGCTCTTGCTCCGGTGATACCTTTTAATTTTCATAAAGCTCGAGCGCTCGCGTCTTTAATTTGAT
TCCTCCTATTTATTTTTGCGTATGCGTACACGTGCTACAAGATCAGCTGGCTGGCGTCATGTATGAGCCAGATTAGCGGT
TGCTTTGATATGTACTCTTCCATCCATGTGGGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis