Browse Element(s) Details


OsAffx.30284.1.S1_at

Description tigr:9634.m00185
TID=OsAffx.30284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02740NANA6+989762..992282Zinc knuckle family protein
LOC_Os06g02750Os.55711.1.S1_at1/116+997123..1001420retrotransposon protein, putative, unclassified
LOC_Os06g02760OsAffx.27427.1.S1_at9/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.32596.1.S1_x_at6/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_x_at3/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.8747.3.S1_at2/116+1002544..1005230hypothetical protein
LOC_Os06g02760Os.54901.1.S1_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02760OsAffx.30177.1.S1_x_at1/116+1002544..1005230hypothetical protein
LOC_Os06g02770Os.53313.1.S1_at9/116+1008684..1010304expressed protein
LOC_Os06g02780Os.9382.1.S1_at11/116+1010587..1013689Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02790OsAffx.30284.1.S1_at11/116+1015825..1018105hypothetical protein
LOC_Os06g02790OsAffx.10809.1.S1_at1/116+1015825..1018105hypothetical protein
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30284.1.S1_at--842--3811Chr06:1015855..1015879 (25 bp)
CTCCTATTCGCGTCTGCTTTGAAAA
LOC_Os06g02790
OsAffx.30284.1.S1_at--56--2451Chr06:1015905..1015929 (25 bp)
AAAATTCTGGGACAACGCATGGCTT
LOC_Os06g02790
OsAffx.30284.1.S1_at--701--2211Chr06:1015916..1015940 (25 bp)
ACAACGCATGGCTTGATGGGCGCTG
LOC_Os06g02790
OsAffx.30284.1.S1_at--601--5311Chr06:1015944..1015968 (25 bp)
GAAGGATGTGGCACCACTCGTGTTC
LOC_Os06g02790
OsAffx.30284.1.S1_at--146--9431Chr06:1015961..1015985 (25 bp)
TCGTGTTCTCGATATCTAGGCGGAA
LOC_Os06g02790
OsAffx.30284.1.S1_at--118--4831Chr06:1015991..1016015 (25 bp)
GCTCACTCGCGCAGGCAATCGAAAG
LOC_Os06g02790
OsAffx.30284.1.S1_at--466--4711Chr06:1016015..1016039 (25 bp)
GCGGCCAGTGGCTAGATGACCAAGC
LOC_Os06g02790
OsAffx.30284.1.S1_at--979--5851Chr06:1016032..1016056 (25 bp)
GACCAAGCCTTACCCATCAATGATG
LOC_Os06g02790
OsAffx.30284.1.S1_at--296--5271Chr06:1016057..1016081 (25 bp)
GAATGACAATTGAGCTCCTGAACCA
LOC_Os06g02790
OsAffx.30284.1.S1_at--599--1551Chr06:1016081..1016105 (25 bp)
AGCTTGTCACTCTCTGGACGACAAT
LOC_Os06g02790
OsAffx.30284.1.S1_at--360--6131Chr06:1017608..1017632 (25 bp)
GAGGGAAGTTCCTATTCGCTGCAAT
LOC_Os06g02790
Target Sequence 
CTCCTATTCGCGTCTGCTTTGAAAATTAAGATTGGTAATGGAGACACAATAAAATTCTGGGACAACGCATGGCTTGATGG
GCGCTGGCCGAAGGATGTGGCACCACTCGTGTTCTCGATATCTAGGCGGAAGAACCGCTCACTCGCGCAGGCAATCGAAA
GCGGCCAGTGGCTAGATGACCAAGCCTTACCCATCAATGATGGAATGACAATTGAGCTCCTGAACCAGCTTGTCACTCTC
TGGACGACAATCCAACAGAGTAAACTCATCCTTGAAATCAGCCTTCCATTTGCCAAAGTTTGCTTGAATACCATTGAAGA
TCAAGTCATTTCGTCTACTCCAGAGATGCCAGCAACAGATTGCCAAAACTTCCATAAAGAAGGGATGAGGGAAGTTCCTA
TTCGCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis