Browse Element(s) Details


Os.55711.1.S1_at

Description gb:AK108634.1
DB_XREF= gi:32993843
TID=Os.55711.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G03, full insert sequence.
FL= gb:AK108634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4904010/11protein phosphatase 2C, putative, expressed
LOC_Os04g292503/11retrotransposon protein, putative, unclassified
LOC_Os06g027501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49000Os.34478.2.S1_x_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000Os.34478.1.S1_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000OsAffx.26408.1.S1_x_at2/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49020NANA7+29349956..29350222expressed protein
LOC_Os07g49030Os.7312.1.S1_a_at10/117+29351351..29355429PHD-finger family protein, expressed
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55711.1.S1_at--239--2612Chr07:29367364..29367388 (25 bp)
AACGCGGCTGCTGAATGTTGTTGGC
LOC_Os07g49040
Os.55711.1.S1_at--907--5131Chr07:29367404..29367428 (25 bp)
GCAAACTTCACGTCAAGCTCGACAA
LOC_Os07g49040
Os.55711.1.S1_at--1159--2351Chr07:29367427..29367451 (25 bp)
AAAGCCATGCTTGTGTACTGCGACA
LOC_Os07g49040
Os.55711.1.S1_at--118--8571Chr07:29367515..29367539 (25 bp)
TGGATGTCCACTTCGTCTGGGAAAA
LOC_Os07g49040
Os.55711.1.S1_at--393--2892Chr07:29367607..29367631 (25 bp)
AAGGGATTGCCCACAGCGCTGTTTG
LOC_Os07g49040
Os.55711.1.S1_at--582--4552Chr07:29367622..29367646 (25 bp)
GCGCTGTTTGAAGATTTCCGATCCA
LOC_Os07g49040
Os.55711.1.S1_at--515--572Chr07:29367642..29367666 (25 bp)
ATCCAGTTTGTGCATCGTCGACGAC
LOC_Os07g49040
Os.55711.1.S1_at--901--6831NONE
GTTTCTTTCTGACTTATTCTTCCGC
NONE
Os.55711.1.S1_at--429--4832Chr07:29367757..29367781 (25 bp)
GCTCAGTCTACGATCCACTTTATTA
LOC_Os07g49040
Os.55711.1.S1_at--9--2013Chr07:29367795..29367819 (25 bp)
ACTCTTGAGCTGTACCGGCATGTAT
LOC_Os07g49040
Os.55711.1.S1_at--86--6312Chr07:29367832..29367856 (25 bp)
GATGAGATCAATACACCTGCGCGTT
LOC_Os07g49040
Target Sequence 
AACGCGGCTGCTGAATGTTGTTGGCTCCATCACCTTCTCGGCAAACTTCACGTCAAGCTCGACAAAGCCATGCTTGTGTA
CTGCGACAACATCTCCGCCGTTTACCTGTCCAAGAATCCAGTTCATCATGGTCGTGCTAAACATGTGGAGCTGGATGTCC
ACTTCGTCTGGGAAAAGGTGGCCGTTGGGGACATCCGCGTCGTGCACATTCCGACTCGACAACAGCTCGCCGATATCATG
ACGAAGGGATTGCCCACAGCGCTGTTTGAAGATTTCCGATCCAGTTTGTGCATCGTCGACGACGCACCAACTGCGGGGGG
GTGTCAAGATGGCTGATCATGTAGATAAGGATAGGCTAGATTACAGTTTCTTTCTGACTTATTCTTCCGCTGTGCTCAGT
CTACGATCCACTTTATTAGGATTCCGTTGGCACTCTTGAGCTGTACCGGCATGTATATATGTAAACTGGATGAGATCAAT
ACACCTGCGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis