Browse Element(s) Details


Os.52698.1.S1_at

Description gb:AK068807.1
DB_XREF= gi:32978832
TID=Os.52698.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G14, full insert sequence.
FL= gb:AK068807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g491109/11D-alanine ligase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49120Os.34729.2.S1_x_at11/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed
LOC_Os07g49120Os.34729.1.S1_at9/117+29416212..29417498Sex determination protein tasselseed 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008716molecular_functionD-alanine-D-alanine ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52698.1.S1_at--359--111NONE
ATTCTTTGTGAAATAGTTGCATCCA
NONE
Os.52698.1.S1_at--40--1231NONE
AGTTGCATCCAACGATATTTTAGGA
NONE
Os.52698.1.S1_at--892--4831Chr07:29393738..29393762 (25 bp)
GCATCCAACGATATTTTAGGAGGTA
LOC_Os07g49110
Os.52698.1.S1_at--1057--10191Chr07:29393761..29393785 (25 bp)
TATATTATTTGGTTGCTGATTCTGA
LOC_Os07g49110
Os.52698.1.S1_at--639--3871Chr07:29393776..29393800 (25 bp)
CTGATTCTGATGCTCTTCTATTGAG
LOC_Os07g49110
Os.52698.1.S1_at--1157--10591Chr07:29393780..29393804 (25 bp)
TTCTGATGCTCTTCTATTGAGGCTT
LOC_Os07g49110
Os.52698.1.S1_at--1156--6331Chr07:29393784..29393808 (25 bp)
GATGCTCTTCTATTGAGGCTTATCA
LOC_Os07g49110
Os.52698.1.S1_at--30--4831Chr07:29393787..29393811 (25 bp)
GCTCTTCTATTGAGGCTTATCATGT
LOC_Os07g49110
Os.52698.1.S1_at--298--10771Chr07:29393796..29393820 (25 bp)
TTGAGGCTTATCATGTGTACTACAT
LOC_Os07g49110
Os.52698.1.S1_at--92--7451Chr07:29393810..29393834 (25 bp)
GTGTACTACATGTATCGTCTATGGC
LOC_Os07g49110
Os.52698.1.S1_at--794--9851Chr07:29393816..29393840 (25 bp)
TACATGTATCGTCTATGGCAAAATA
LOC_Os07g49110
Target Sequence 
ATTCTTTGTGAAATAGTTGCATCCAACGATATTTTAGGAGGTATATTATTTGGTTGCTGATTCTGATGCTCTTCTATTGA
GGCTTATCATGTGTACTACATGTATCGTCTATGGCAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis