Browse Element(s) Details


Os.5154.1.S1_at

Description gb:AK100144.1
DB_XREF= gi:32985353
TID=Os.5154.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU173886(S20483),AU173885(S20483)~phytochelatin synthetase-like protein (P0597G07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H04, full insert sequence.
FL= gb:AK100144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4908011/11Phytochelatin synthetase-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5154.1.S1_at--436--6711Chr07:29381565..29381589 (25 bp)
GTTCGAGCAGGCGTTCACGTTCAAC
LOC_Os07g49080
Os.5154.1.S1_at--976--1931Chr07:29381524..29381548 (25 bp)
ACGGCACCACCATGATCTTGATGAA
LOC_Os07g49080
Os.5154.1.S1_at--35--5331Chr07:29381492..29381516 (25 bp)
GAAGGGTTCCAGTACCTCAAGAGGG
LOC_Os07g49080
Os.5154.1.S1_at--997--1351Chr07:29381467..29381491 (25 bp)
AGAGCAACATGAGCGGCGTCGACTA
LOC_Os07g49080
Os.5154.1.S1_at--679--1331Chr07:29381311..29381335 (25 bp)
AGAGGATTCCGAGCAGTGCCCATCG
LOC_Os07g49080
Os.5154.1.S1_at--1087--491Chr07:29381290..29381314 (25 bp)
ATCGTCGTTGTCTTGTCCTATTGTG
LOC_Os07g49080
Os.5154.1.S1_at--83--7531Chr07:29381268..29381292 (25 bp)
GTGGACTACTCTTCTTGTATTCATG
LOC_Os07g49080
Os.5154.1.S1_at--941--6871Chr07:29381252..29381276 (25 bp)
GTATTCATGTCGTCCATTCTACTGG
LOC_Os07g49080
Os.5154.1.S1_at--687--7751Chr07:29381229..29381253 (25 bp)
GGTGTTGTCGCTGCTGTAAAAACGT
LOC_Os07g49080
Os.5154.1.S1_at--376--9811Chr07:29381213..29381237 (25 bp)
TAAAAACGTTCAACGCGTCGCTGGT
LOC_Os07g49080
Os.5154.1.S1_at--470--4571Chr07:29381174..29381198 (25 bp)
GCGCTGCTAGGATGGTTTGTGATAT
LOC_Os07g49080
Target Sequence 
GTTCGAGCAGGCGTTCACGTTCAACGCCACGGCGATGGGGAACGGCACCACCATGATCTTGATGAAGGGGAGGGAAGGGT
TCCAGTACCTCAAGAGGGAGAGCAACATGAGCGGCGTCGACTACCCCGTGGCCGGGAAGCAGCAGTCGGTGCTGCTGTTC
ACCAAAAAGAGGAGCGGCGGCGGCATCGACGTGGTCGGCGGCGACGGGTTCCCGACGAGGGTGTTGTTCAACGGGCACGA
GTGCGCCATGCCGCAGAGGATTCCGAGCAGTGCCCATCGTCGTTGTCTTGTCCTATTGTGGACTACTCTTCTTGTATTCA
TGTCGTCCATTCTACTGGTGTTGTCGCTGCTGTAAAAACGTTCAACGCGTCGCTGGTAGAGGAGACAGGAGGCGCTGCTA
GGATGGTTTGTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis