Browse Element(s) Details


Os.34354.1.S1_at

Description gb:AK071728.1
DB_XREF= gi:32981751
TID=Os.34354.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C73169(E3252)~pectin methylesterase-like protein (P0597G07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full insert sequence.
FL= gb:AK071728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g491008/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49050OsAffx.28962.1.S1_at11/117+29368854..29370005hypothetical protein
LOC_Os07g49060NANA7+29371026..29371406hypothetical protein
LOC_Os07g49070OsAffx.10352.1.S1_at11/117+29374568..29379279hypothetical protein
LOC_Os07g49080Os.5154.1.S1_at11/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49080OsAffx.16668.1.S1_at1/117+29381048..29383329Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g49090OsAffx.10351.1.S1_at11/117+29383997..29384911hypothetical protein
LOC_Os07g49100Os.34354.1.S1_at8/117+29386369..29388415Pectinesterase family protein, expressed
LOC_Os07g49110Os.15204.1.S1_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.15204.2.S1_x_at11/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_x_at10/117+29390754..29400208D-alanine ligase family, putative, expressed
LOC_Os07g49110Os.52698.1.S1_at9/117+29390754..29400208D-alanine ligase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34354.1.S1_at--811--9531Chr07:29388039..29388063 (25 bp)
TCTACTACGCGGAGGTTGACAACCA
LOC_Os07g49100
Os.34354.1.S1_at--558--9671Chr07:29388117..29388141 (25 bp)
TCACCTACCAGGACGTCCAGAAGGA
LOC_Os07g49100
Os.34354.1.S1_at--898--971Chr07:29388138..29388162 (25 bp)
AGGAGTTCACCGTGGAGGCCTTCAT
LOC_Os07g49100
Os.34354.1.S1_at--842--8031Chr07:29388172..29388196 (25 bp)
GGAGTTCATCCCCAAGTTCGGCGTC
LOC_Os07g49100
Os.34354.1.S1_at--653--651Chr07:29388239..29388263 (25 bp)
ATGCACTAATTTTTCACTCCTGTAC
LOC_Os07g49100
Os.34354.1.S1_at--423--10331Chr07:29388250..29388274 (25 bp)
TTTCACTCCTGTACTATAACCATCA
LOC_Os07g49100
Os.34354.1.S1_at--954--3951Chr07:29388293..29388317 (25 bp)
CGGACCTACGTACTACACACTATAT
LOC_Os07g49100
Os.34354.1.S1_at--848--271Chr07:29388316..29388340 (25 bp)
ATATGGATCTTCGATCTCTCACTCA
LOC_Os07g49100
Os.34354.1.S1_at--826--451Chr07:29388484..29388508 (25 bp)
ATCTCACACATTCCAACTGCAGTCG
NONE
Os.34354.1.S1_at--103--5031Chr07:29388502..29388526 (25 bp)
GCAGTCGCCGCGGTTGATTAACTAA
NONE
Os.34354.1.S1_at--256--831Chr07:29388559..29388583 (25 bp)
ATGGATCTCGATTGTTTTGGGACTG
NONE
Target Sequence 
TCTACTACGCGGAGGTTGACAACCATGGCCCCGGCGCCGACATGAGCAAGCGCGCCAAGTGGAAGGGCGTCCAGTCCCTC
ACCTACCAGGACGTCCAGAAGGAGTTCACCGTGGAGGCCTTCATCCAGGGCCAGGAGTTCATCCCCAAGTTCGGCGTCCC
TTACATCCCCGGCCTTCTCCCCCAGACGCAGCAGGGCAGGATGCACTAATTTTTCACTCCTGTACTATAACCATCATCGC
CCCAGCCCCCAGCCCGGACCTACGTACTACACACTATATATGGATCTTCGATCTCTCACTCACCTGCATCAATTGCCGGC
CCCCATTATTTATTTTCATATACATATACTTGTTGTTATATATATATATGCATCTCACACATTCCAACTGCAGTCGCCGC
GGTTGATTAACTAAATTAGTAGCTCGATCATGGAACATGCATATGCATGGATCTCGATTGTTTTGGGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis