Browse Element(s) Details


Os.51367.1.S2_at

Description gb:AK061484.1
DB_XREF= gi:32971502
TID=Os.51367.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H09, full insert sequence.
FL= gb:AK061484.1 gb:AK068702.1 gb:AK062651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0778011/11SBP domain containing protein, expressed
LOC_Os07g490401/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51367.1.S2_at--896--2751Chr02:4075886..4075910 (25 bp)
AAGACTACTTTCATGGTTCAGCACA
LOC_Os02g07780
Os.51367.1.S2_at--783--7891Chr02:4075900..4075924 (25 bp)
GGTTCAGCACATTGCATAGATCTTT
LOC_Os02g07780
Os.51367.1.S2_at--735--2231Chr02:4075929..4075953 (25 bp)
AAATTCAACCTATACACTGTACCAA
LOC_Os02g07780
Os.51367.1.S2_at--1120--9851Chr02:4075941..4075965 (25 bp)
TACACTGTACCAAATGCCAAATTCA
LOC_Os02g07780
Os.51367.1.S2_at--922--4732Chr07:29363136..29363163 (24 bp)
GCTGTTTTGTCATTGTTGTTGTTTG
LOC_Os07g49040
Os.51367.1.S2_at--698--2831Chr02:4076001..4076025 (25 bp)
AAGTATCCTGGAGTTGTGCACACCC
LOC_Os02g07780
Os.51367.1.S2_at--8--8051Chr02:4076010..4076034 (25 bp)
GGAGTTGTGCACACCCATGAAAAAA
LOC_Os02g07780
Os.51367.1.S2_at--24--2251Chr02:4076034..4076058 (25 bp)
AAATTAGACCCTTGAGCACATTTGG
LOC_Os02g07780
Os.51367.1.S2_at--733--4311Chr02:4076043..4076067 (25 bp)
CCTTGAGCACATTTGGGTTTAGAAA
LOC_Os02g07780
Os.51367.1.S2_at--423--9051Chr02:4076079..4076103 (25 bp)
TGCAGTGTGCTGCTAAGCTTATGTC
LOC_Os02g07780
Os.51367.1.S2_at--596--4771Chr02:4076087..4076111 (25 bp)
GCTGCTAAGCTTATGTCACTATAGT
LOC_Os02g07780
Target Sequence 
AAGACTACTTTCATGGTTCAGCACATTGCATAGATCTTTGAAAAAATTCAACCTATACACTGTACCAAATGCCAAATTCA
GATGCTGTTTTGTCATTGTTGTTGTTTGTTAAAAAAAGTATCCTGGAGTTGTGCACACCCATGAAAAAAAATTAGACCCT
TGAGCACATTTGGGTTTAGAAAATAAGATGGTGTGCAGTGTGCTGCTAAGCTTATGTCACTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51367.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis