Browse Element(s) Details


Os.15849.2.A1_s_at

Description gb:CB966798
DB_XREF= gi:30228907
DB_XREF=NL43_A05
CLONE=NL43_A05
TID=Os.15849.2
CNT=8
FEA=EST
TIER=Stack
STK=7
UG=Os.15849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-D06, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g078101/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15849.2.A1_s_at--198--2431Chr08:23221964..23221988 (25 bp)
AAAACTCTAGTTAATCTGCCTTCTT
NONE
Os.15849.2.A1_s_at--514--3051Chr08:23221952..23221976 (25 bp)
AATCTGCCTTCTTTGTTTCAAGCTA
NONE
Os.15849.2.A1_s_at--590--10511Chr08:23221936..23221960 (25 bp)
TTCAAGCTATTCCAACGGCTGGGAT
NONE
Os.15849.2.A1_s_at--208--8351Chr08:23221920..23221944 (25 bp)
GGCTGGGATCTAATCACAACGTTCA
NONE
Os.15849.2.A1_s_at--482--2212Chr02:4087993..4088012 (20 bp)
ACAACGTTCAATTCCAAGAATCTGA
LOC_Os02g07810
Os.15849.2.A1_s_at--515--2731Chr08:23221890..23221914 (25 bp)
AAGAATCTGACGACTGTGGGAACCA
NONE
Os.15849.2.A1_s_at--655--8651Chr08:23221876..23221900 (25 bp)
TGTGGGAACCAGCTGAGCCCGCCTT
NONE
Os.15849.2.A1_s_at--330--7271Chr08:23221850..23221874 (25 bp)
GTCCAGCTGCATCAGGTCTTGCAAG
NONE
Os.15849.2.A1_s_at--284--9591Chr08:23221834..23221858 (25 bp)
TCTTGCAAGCCTTCCCAGAGCTGGT
NONE
Os.15849.2.A1_s_at--409--1931Chr08:23221713..23221737 (25 bp)
ACGGAGACAATGTGTCGGACTTGGC
NONE
Os.15849.2.A1_s_at--1162--5071Chr08:23221476..23221500 (25 bp)
GCACGCCGCGGTACTTGTTCTTCTT
NONE
Target Sequence 
AAAACTCTAGTTAATCTGCCTTCTTTGTTTCAAGCTATTCCAACGGCTGGGATCTAATCACAACGTTCAATTCCAAGAAT
CTGACGACTGTGGGAACCAGCTGAGCCCGCCTTCGTCCAGCTGCATCAGGTCTTGCAAGCCTTCCCAGAGCTGGTCCCCT
GTCTCGCCGCCNCCGCCGCCNCCGCCGCCTCCTCCTCCCTGCGGCCACCGCGTGTGCTCTACTTGCTCGTCGGCGTCTGC
GCTGCGCGGCGACGGAGACAATGTGTCGGACTTGGCGGCGGCGCTGGCGTCGCCATTGCTGTCGTCGTGCGCGGAGAGCT
GCTCGGGGAACGGGAAGTTGAGCTTGGCGCGCGGGCCGCGGAACTCGACGGCGGCGCGGTCGTACGCCCTGGCGGCCTCC
TCGGCGGTGTCGAACGTCCCCAGCCACTTGCGCACCGCTCGGCGAGGGTCGCNGATNCTCCGCAGCCCACTTCCCCCATG
GCCGCTGCCGCACGCCGCGGTACTTGTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15849.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis