Browse Element(s) Details


Os.50590.2.A1_at

Description gb:AJ491818.1
DB_XREF= gi:21628684
GEN=hkt6
TID=Os.50590.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50590 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for putative sodium transporter (hkt6 gene).
PROD=putative sodium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0783010/11Cation transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015081molecular_functionsodium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50590.2.A1_at--838--6491Chr02:4104509..4104533 (25 bp)
GATAGTATCCGCTCTATTTCAGTCG
LOC_Os02g07830
Os.50590.2.A1_at--496--191Chr02:4104524..4104548 (25 bp)
ATTTCAGTCGGTCAATGCTAGGCAT
LOC_Os02g07830
Os.50590.2.A1_at--499--6771Chr02:4104561..4104585 (25 bp)
GTTACAGATCTGTCAAACCTCTCTT
LOC_Os02g07830
Os.50590.2.A1_at--1071--9551Chr02:4104582..4104606 (25 bp)
TCTTCAGCAATCCTAGTCCTATACA
LOC_Os02g07830
Os.50590.2.A1_at--880--3551NONE
CATCATGATGTATCTCCCTGGTTAC
NONE
Os.50590.2.A1_at--968--9851Chr02:4105128..4105152 (25 bp)
TACACTTCGTTTTTACCCAGACATG
LOC_Os02g07830
Os.50590.2.A1_at--995--5451Chr02:4105205..4105229 (25 bp)
GAACTGGATCTTCTCACATATGTCT
LOC_Os02g07830
Os.50590.2.A1_at--631--5711Chr02:4105272..4105296 (25 bp)
GACTCGATGGCTACAGATCCACTTA
LOC_Os02g07830
Os.50590.2.A1_at--342--10591Chr02:4105447..4105471 (25 bp)
TTCTCGGTTGGCTACAGCTGCAAGA
LOC_Os02g07830
Os.50590.2.A1_at--692--8311Chr02:4105472..4105496 (25 bp)
GGCTACTGAACCATGATGCACGCTG
LOC_Os02g07830
Os.50590.2.A1_at--617--511Chr02:4105558..4105582 (25 bp)
ATCGTCATGCTTTTCGGGAGGCTTA
LOC_Os02g07830
Target Sequence 
GATAGTATCCGCTCTATTTCAGTCGGTCAATGCTAGGCATGCAGGTGAATCTGTTACAGATCTGTCAAACCTCTCTTCAG
CAATCCTAGTCCTATACACCATCATGATGTATCTCCCTGGTTACACTTCGTTTTTACCCAGACATGATGGTGAGGATTCT
AAGACCGAGAAGATAAACAAAAGAAAAGGGCTATTGGAGAACTGGATCTTCTCACATATGTCTTATTTGGCTATCTTTGT
AATGCTAATTTGCATCACAGAACGGGACTCGATGGCTACAGATCCACTTAATTTCAATGTTTTCAGCATATTGTTTGAAG
TCGTCAGTGCATATGGAAATGTGGGGTTCTCGGTTGGCTACAGCTGCAAGAGGCTACTGAACCATGATGCACGCTGCAAG
GATGCCTCGTACGGGTTTGCGGGGAAATGGAGCGACAATGGGAAAGCGATCCTGATCATCGTCATGCTTTTCGGGAGGCT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50590.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis