Browse Element(s) Details


OsAffx.24156.2.S1_at

Description tigr:9631.m02503
TID=OsAffx.24156.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2556011/11hypothetical protein
LOC_Os02g078601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25550OsAffx.13026.1.S1_at11/113+14576970..14578374Myb-like DNA-binding domain containing protein
LOC_Os03g25554NANA3+14580611..14581061hypothetical protein
LOC_Os03g25560OsAffx.24156.2.S1_at11/113+14587936..14589016hypothetical protein
LOC_Os03g25570NANA3+14606215..14606928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24156.2.S1_at--961--4651Chr03:14588904..14588928 (25 bp)
GCGGCAGCCGGAGGTCCTTGCGGAT
LOC_Os03g25560
OsAffx.24156.2.S1_at--873--5731Chr03:14588579..14588603 (25 bp)
GACTGGATTTAAGGTCCCTGCTGGA
LOC_Os03g25560
OsAffx.24156.2.S1_at--344--3914Chr02:16804817..16804885 (25 bp)
CTGGATTTAAGGTCCCTGCTGGAGA
NONE
OsAffx.24156.2.S1_at--645--3911Chr03:14588559..14588583 (25 bp)
CTGGAGATGCTCTTAGCCAAGTGTA
LOC_Os03g25560
OsAffx.24156.2.S1_at--893--4811Chr03:14588115..14588575 (25 bp)
GCTCTTAGCCAAGTGTACATCCAGA
LOC_Os03g25560
OsAffx.24156.2.S1_at--1050--10451Chr03:14588111..14588571 (25 bp)
TTAGCCAAGTGTACATCCAGAAGAA
LOC_Os03g25560
OsAffx.24156.2.S1_at--241--5511Chr03:14588089..14588113 (25 bp)
GAACACGGAGTGGAGATTTCTGAGA
LOC_Os03g25560
OsAffx.24156.2.S1_at--738--7691Chr03:14588040..14588064 (25 bp)
GGGTACCTACTTGCTAGTCCACCGT
LOC_Os03g25560
OsAffx.24156.2.S1_at--558--9891Chr03:14588033..14588057 (25 bp)
TACTTGCTAGTCCACCGTCGTCGTT
LOC_Os03g25560
OsAffx.24156.2.S1_at--458--5311Chr03:14587985..14588009 (25 bp)
GAAGGAGGCCACTGCTCACCATGTT
LOC_Os03g25560
OsAffx.24156.2.S1_at--779--9671Chr03:14587970..14587994 (25 bp)
TCACCATGTTCTACGCTGAGCGACG
LOC_Os03g25560
Target Sequence 
GCGGCAGCCGGAGGTCCTTGCGGATGATGGGCGACAGAGGGACTGGATTTAAGGTCCCTGCTGGAGATGCTCTTAGCCAA
GTGTACATCCAGAAGAACACGGAGTGGAGATTTCTGAGAGAGGTGGATGGGGAAGGGGAGGTGGGGTACCTACTTGCTAG
TCCACCGTCGTCGTTGCTCACGGGGAGGTGGGCTAAGGGAAGGAGGCCACTGCTCACCATGTTCTACGCTGAGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24156.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis