Browse Element(s) Details


Os.9124.1.S1_at

Description gb:AK067170.1
DB_XREF= gi:32977188
TID=Os.9124.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098C06, full insert sequence.
FL= gb:AK067170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0788011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9124.1.S1_at--292--5571Chr02:4133319..4133343 (25 bp)
GAAAGTTTTACCCAGAAGCTCTCAA
LOC_Os02g07880
Os.9124.1.S1_at--970--4811Chr02:4133381..4133405 (25 bp)
GCTCTACACGATTCTTTGCTTTTGG
LOC_Os02g07880
Os.9124.1.S1_at--1147--10531Chr02:4133396..4133420 (25 bp)
TTGCTTTTGGCCTAGGAATTCCCTA
LOC_Os02g07880
Os.9124.1.S1_at--446--7051Chr02:4133474..4133498 (25 bp)
GTAACACAGATTCAGGGCCAGAGAC
LOC_Os02g07880
Os.9124.1.S1_at--1028--5671Chr02:4133496..4133520 (25 bp)
GACATATCAACGTTGCTGCGGCAAT
LOC_Os02g07880
Os.9124.1.S1_at--751--9131Chr02:4133512..4133536 (25 bp)
TGCGGCAATGGCGATGTCTTGCAAA
LOC_Os02g07880
Os.9124.1.S1_at--1070--7131Chr02:4133527..4133551 (25 bp)
GTCTTGCAAATTCTGAGTCCCTAGG
LOC_Os02g07880
Os.9124.1.S1_at--828--10431Chr02:4133573..4133597 (25 bp)
TTAGTTTTGATACAGCCCTCATTGT
LOC_Os02g07880
Os.9124.1.S1_at--397--6911Chr02:4133616..4133640 (25 bp)
GTATGTTGCTATGAGCTGCTCTTCA
LOC_Os02g07880
Os.9124.1.S1_at--1157--9991Chr02:4133675..4133699 (25 bp)
TAGCTCCTCCCATCTGTTGAGGAAT
LOC_Os02g07880
Os.9124.1.S1_at--249--9851Chr02:4133784..4133808 (25 bp)
TACAGTTAATCTGCCCTCTTGAGTT
LOC_Os02g07880
Target Sequence 
GAAAGTTTTACCCAGAAGCTCTCAACAACCTANTGAAGCACTCCAGCTACACGTCCACTTGAGCTCTACACGATTCTTTG
CTTTTGGCCTAGGAATTCCCTAGGATTTATTTCTTCTTCTATTTTATGTAAATTGTGAAATTGATATTTAGCTGCGTAAC
ACAGATTCAGGGCCAGAGACATATCAACGTTGCTGCGGCAATGGCGATGTCTTGCAAATTCTGAGTCCCTAGGTAGGGCT
GAGGCGATATTTATTTAGTTTTGATACAGCCCTCATTGTAACATGTTGTGCTTTTTTGTATGTTGCTATGAGCTGCTCTT
CACGCCCACATTTTCTCTCTTTTCTTTCTAGTTTCCTAGCTCCTCCCATCTGTTGAGGAATAGGCGTTTTTGTCAGATTG
GAACTGTTATTATATGATCCATTCTTTGTAGACATGAAGAGATTATTATGACACCAGCACAACCTTACAGTTAATCTGCC
CTCTTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis