Browse Element(s) Details


Os.47485.1.S1_at

Description gb:AK067063.1
DB_XREF= gi:32977081
TID=Os.47485.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full insert sequence.
FL= gb:AK067063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0787011/11Vacuolar ATP synthase catalytic subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed
LOC_Os02g07840Os.1502.1.S1_at11/112+4109767..4112676bZIP transcription factor family protein, expressed
LOC_Os02g07850OsAffx.11932.1.S1_x_at10/112+4112945..4115853hypothetical protein
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007030biological_processGolgi organization and biogenesis
GO:0009555biological_processmale gametophyte development
GO:0015992biological_processproton transport
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47485.1.S1_at--232--10711Chr02:4126262..4126286 (25 bp)
TTGCCCATTCTACAAATCTGTTTGG
LOC_Os02g07870
Os.47485.1.S1_at--550--531Chr02:4126970..4126994 (25 bp)
ATCGCATGGGCGATCTATTCTACCG
LOC_Os02g07870
Os.47485.1.S1_at--980--1411Chr02:4127142..4127166 (25 bp)
AGAAGCTGTACGATGACCTTACCGC
LOC_Os02g07870
Os.47485.1.S1_at--564--4491Chr02:4127165..4127189 (25 bp)
GCCGGGTTCCGCAATCTAGAAGACG
LOC_Os02g07870
Os.47485.1.S1_at--989--9071Chr02:4127283..4127307 (25 bp)
TGCTACCGAGGCTCTAGGTCGAGAT
LOC_Os02g07870
Os.47485.1.S1_at--394--2251Chr02:4127315..4127339 (25 bp)
AAATTTTCCTGCAACTATACGCGCC
LOC_Os02g07870
Os.47485.1.S1_at--253--3431Chr02:4127339..4127363 (25 bp)
CGTCGTCGTTTTGTCAGGTTTTGAT
LOC_Os02g07870
Os.47485.1.S1_at--844--1011Chr02:4127354..4127378 (25 bp)
AGGTTTTGATCCCAAGTGCTCGATG
LOC_Os02g07870
Os.47485.1.S1_at--169--8531Chr02:4127377..4127401 (25 bp)
TGGACACGCCATTATTTCTACTCTA
LOC_Os02g07870
Os.47485.1.S1_at--377--6271Chr02:4127474..4127498 (25 bp)
GATGTCCATCTGTTTAAAAGTCTTC
LOC_Os02g07870
Os.47485.1.S1_at--1105--7811Chr02:4127505..4127529 (25 bp)
GGTCATTCATCTTTATTTGTTCGTT
LOC_Os02g07870
Target Sequence 
TTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACATTATTCATTTCAACACATTGGCAACCCAGGCGGTGGAGCGGG
CAGCTGGTGCTGATGGACAGAAGATTACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTGTCG
CAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAATTTCAGAAGCTGTACGATGACCTTACCGCCGG
GTTCCGCAATCTAGAAGACGAAGCACGGNGAATAATTATTGTAGATTCTGTGTAAACAATAAGGATATATCACCAAATGT
TCTATAAAAAAAACATGGAAGCATTCCATTTGCTGCTACCGAGGCTCTAGGTCGAGATCATGTAGAAATTTTCCTGCAAC
TATACGCGCCGTCGTCGTTTTGTCAGGTTTTGATCCCAAGTGCTCGATGGACACGCCATTATTTCTACTCTATGTATCAT
TTATTTATCATCTTCATTCACATCATTGTAATAAACATGGGCATGTTTATAGTCGAATAANTACGATGTCCATCTGTTTA
AAAGTCTTCGTTGAAGGTCATTCATCTTTATTTGTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis